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CSPI03G30630 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G30630
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr3:28012095..28012304
RNA-Seq ExpressionCSPI03G30630
SyntenyCSPI03G30630
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650970.1 hypothetical protein Csa_000996 [Cucumis sativus]1.0e-3098.55Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMKAC
        MDGLC+VGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMKAC
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMKAC

KAG6580429.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]7.3e-1642.75Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------
        MDGLCKVGRSDEAMELL+EAE+NG+KPSVVTFNTLFNG+                                                             
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------

Query:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK
           TF+RALCR + KEKD+LEDAHQ+F+KMK
Subjt:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK

KAG7017186.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-1643.51Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------
        MDGLCKVGRSDEAMELL+EAE+NG+KPSVVTFNTLFNG+                                                             
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------

Query:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK
           TF+RALCR S KEKD+LEDAHQ+F+KMK
Subjt:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK

XP_022157329.1 pentatricopeptide repeat-containing protein At1g09900-like [Momordica charantia]5.1e-1745.04Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------
        MDGLCKVGRSDEAMELLNEAEENGL+PSVVTFNTLFNG+                                                             
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------

Query:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK
           TF+RALCR S KEKD+LEDAHQ+F+KMK
Subjt:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK

XP_023528121.1 pentatricopeptide repeat-containing protein At5g39710-like [Cucurbita pepo subsp. pepo]3.3e-1643.51Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------
        MDGLCKVGRSDEAMELL+EAE+NG+KPSVVTFNTLFNG+                                                             
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------

Query:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK
           TF+RALCR S KEKD+LEDAHQ+F+KMK
Subjt:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK

TrEMBL top hitse value%identityAlignment
A0A0A0LF40 Uncharacterized protein1.7e-2698.39Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQL
        MDGLC+VGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQL
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQL

A0A2I4EIR4 pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like4.0e-1238.17Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------
        MDG CKVGRSDEAMELL+EAEE GL P+VV++NTLF G+                                                             
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------

Query:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK
           TF+R LCR S KEKD+LEDA+Q+F+KMK
Subjt:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK

A0A6J1DW66 pentatricopeptide repeat-containing protein At1g09900-like2.4e-1745.04Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------
        MDGLCKVGRSDEAMELLNEAEENGL+PSVVTFNTLFNG+                                                             
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------

Query:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK
           TF+RALCR S KEKD+LEDAHQ+F+KMK
Subjt:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK

A0A6J1F9P1 pentatricopeptide repeat-containing protein At1g09900-like3.5e-1642.75Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------
        MDGLCKVGRSDEAMELL+EAE+NG+KPSVVTFNTLFNG+                                                             
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------

Query:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK
           TF+RALCR + KEKD+LEDAHQ+F+KMK
Subjt:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK

A0A6J1J506 pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like1.0e-1542.75Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------
        MDGLCKVGRSDEAMELL+EAE NG+KPSVVTFNTLFNG+                                                             
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF-------------------------------------------------------------

Query:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK
           TF+RALCR + KEKD+LEDAHQ+F+KMK
Subjt:  ---TFIRALCRTSLKEKDVLEDAHQLFKKMK

SwissProt top hitse value%identityAlignment
Q76C99 Protein Rf1, mitochondrial7.1e-0641.18Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMKA
        ++G C  G+ DEAM+LL+     GLKP+ VT++TL NG+      C+ S      +EDA  LFK+M++
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMKA

Q9C8T7 Pentatricopeptide repeat-containing protein At1g633301.6e-0537.31Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMK
        ++G+CK G+ D+  +L       G+KP+VVT+NT+ +G      LC      K +L++A+ L KKMK
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMK

Q9LUR2 Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial1.6e-0535.82Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMK
        + G+CK+G+ ++A +L       G+KP+V+T+ T+ +GF      CR  L     + +A  LFKKMK
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMK

Q9LVQ5 Pentatricopeptide repeat-containing protein At5g558401.6e-0553.85Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF
        +DGLCK G  DEA+ LLNE  ++G+ P +VT++ L NGF
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF

Q9M9X9 Pentatricopeptide repeat-containing protein At1g06710, mitochondrial7.1e-0650Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFI
        +DGLCKVG++DEA +L+   EE G +P+VVT+  + +GF  I
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFI

Arabidopsis top hitse value%identityAlignment
AT1G06710.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.1e-0750Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFI
        +DGLCKVG++DEA +L+   EE G +P+VVT+  + +GF  I
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFI

AT1G62590.1 pentatricopeptide (PPR) repeat-containing protein1.1e-0637.31Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMK
        ++G+CK G+ D+  +L       G+KP+VVT+NT+ +G      LC      K +L++A+ L KKMK
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMK

AT1G63330.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-0637.31Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMK
        ++G+CK G+ D+  +L       G+KP+VVT+NT+ +G      LC      K +L++A+ L KKMK
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMK

AT3G16710.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-0635.82Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMK
        + G+CK+G+ ++A +L       G+KP+V+T+ T+ +GF      CR  L     + +A  LFKKMK
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMK

AT5G55840.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-0653.85Show/hide
Query:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF
        +DGLCK G  DEA+ LLNE  ++G+ P +VT++ L NGF
Subjt:  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGCTTGTGTAAGGTCGGCAGATCAGACGAGGCAATGGAATTGCTCAATGAAGCGGAGGAAAATGGTTTAAAACCAAGTGTTGTCACTTTCAACACCCTCTTCAA
TGGATTCACCTTCATCAGAGCGTTATGCAGGACATCCTTGAAAGAAAAGGATGTATTGGAAGATGCCCATCAACTGTTTAAGAAAATGAAGGCCTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGCTTGTGTAAGGTCGGCAGATCAGACGAGGCAATGGAATTGCTCAATGAAGCGGAGGAAAATGGTTTAAAACCAAGTGTTGTCACTTTCAACACCCTCTTCAA
TGGATTCACCTTCATCAGAGCGTTATGCAGGACATCCTTGAAAGAAAAGGATGTATTGGAAGATGCCCATCAACTGTTTAAGAAAATGAAGGCCTGCTGA
Protein sequenceShow/hide protein sequence
MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMKAC