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CSPI03G30660 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G30660
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein L35
Genome locationChr3:28022569..28023220
RNA-Seq ExpressionCSPI03G30660
SyntenyCSPI03G30660
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044224.1 RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa]4.9e-4379.07Show/hide
Query:  MAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLL
        +AMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS S++L+QRRRTLKSRMLSFVKKHLG  RSK PH+ES+Y+ WHVG  
Subjt:  MAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLL

Query:  ERRCVAAFGVGLGYVVVALKTQIELANAI
                GVG GY +VALKTQI LANA+
Subjt:  ERRCVAAFGVGLGYVVVALKTQIELANAI

KAE8650972.1 hypothetical protein Csa_002588 [Cucumis sativus]1.8e-9098.37Show/hide
Query:  MAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLL
        MAMAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVS+ILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLL
Subjt:  MAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLL

Query:  ERRCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLCQFL
        ERRCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHL QFL
Subjt:  ERRCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLCQFL

TYK24910.1 50S ribosomal protein L35 [Cucumis melo var. makuwa]1.6e-4180.49Show/hide
Query:  GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCV
        GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS S++L+QRRRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG       
Subjt:  GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCV

Query:  AAFGVGLGYVVVALKTQIELANA
           GVG GY +VALKTQI LANA
Subjt:  AAFGVGLGYVVVALKTQIELANA

XP_008442323.1 PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo]5.5e-7182.87Show/hide
Query:  MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLER
        MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS S++L+QRRRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG    
Subjt:  MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLER

Query:  RCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLCQF
              GVG GY +VALKTQI LANA+G SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLHL  F
Subjt:  RCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLCQF

XP_038906422.1 uncharacterized protein LOC120092221 [Benincasa hispida]2.6e-6075Show/hide
Query:  MAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLL
        +AMA+G RRSFKI+VHAKICNLYIKLKATLK PSGK QRLLKLDKLLI  DSKS S IL+QRRRTLKSRMLSFVKKHLG  RSK PHAES  +SW VG +
Subjt:  MAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLL

Query:  ERRCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLC--VFVLWLQKCK--YLWAMLLLIPLFPLLLFQLDTFVHLLHLCQFL
        E RCVA FGVGLGY ++AL T I L NAI PSFSS IWV LC  +FVLWL KCK  YLWA+L LI L PL L QLD FVHLLHL  FL
Subjt:  ERRCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLC--VFVLWLQKCK--YLWAMLLLIPLFPLLLFQLDTFVHLLHLCQFL

TrEMBL top hitse value%identityAlignment
A0A0A0LCL9 50S ribosomal protein L351.1e-6798.57Show/hide
Query:  MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLER
        MAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVS+ILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLER
Subjt:  MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLER

Query:  RCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLC
        RCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLC
Subjt:  RCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLC

A0A1S3B4Y8 uncharacterized protein LOC1034862292.7e-7182.87Show/hide
Query:  MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLER
        MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS S++L+QRRRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG    
Subjt:  MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLER

Query:  RCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLCQF
              GVG GY +VALKTQI LANA+G SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLHL  F
Subjt:  RCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLCQF

A0A5A7TM08 RING-H2 finger protein ATL74-like2.4e-4379.07Show/hide
Query:  MAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLL
        +AMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS S++L+QRRRTLKSRMLSFVKKHLG  RSK PH+ES+Y+ WHVG  
Subjt:  MAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLL

Query:  ERRCVAAFGVGLGYVVVALKTQIELANAI
                GVG GY +VALKTQI LANA+
Subjt:  ERRCVAAFGVGLGYVVVALKTQIELANAI

A0A5D3DNQ2 50S ribosomal protein L357.6e-4280.49Show/hide
Query:  GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCV
        GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS S++L+QRRRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG       
Subjt:  GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCV

Query:  AAFGVGLGYVVVALKTQIELANA
           GVG GY +VALKTQI LANA
Subjt:  AAFGVGLGYVVVALKTQIELANA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCATGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTCCCTTCCGGGAAATT
CCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGTATCTCAGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCG
TAAAGAAGCATTTGGGACATCGCCGATCTAAATTCCCACATGCTGAATCTAGATATCGGTCTTGGCATGTTGGCCTTCTGGAACGAAGGTGTGTGGCTGCTTTTGGTGTG
GGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGAGCTTGCAAATGCCATTGGTCCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTTTTATG
GCTCCAGAAATGTAAGTACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTATGCCAATTTT
TATGA
mRNA sequenceShow/hide mRNA sequence
CATGTATGGCAATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCATGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTCCCTTCCGGG
AAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGTATCTCAGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAG
CTTCGTAAAGAAGCATTTGGGACATCGCCGATCTAAATTCCCACATGCTGAATCTAGATATCGGTCTTGGCATGTTGGCCTTCTGGAACGAAGGTGTGTGGCTGCTTTTG
GTGTGGGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGAGCTTGCAAATGCCATTGGTCCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTT
TTATGGCTCCAGAAATGTAAGTACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTATGCCA
ATTTTTATGACATATTTCTTTTT
Protein sequenceShow/hide protein sequence
MAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSQILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGV
GLGYVVVALKTQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLCQFL