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CSPI03G31570 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G31570
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein L7/L12
Genome locationChr3:28539763..28542003
RNA-Seq ExpressionCSPI03G31570
SyntenyCSPI03G31570
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER25957.1 50S ribosomal protein L7/L12 [Striga asiatica]3.2e-0636.36Show/hide
Query:  RGIFNDGKHGGHSWERST-DQIPVPGCSRFIEGITGIVKGHSASIERESRINIARASAKSIISNFRLGFSEMTSDWLLHRQCRRSTAVSLLLLLLLIPPF
        RG+ +D  H  HS E +  DQ+ VP  SR +E +T +V+  S+S+E ESR ++ R++A++I+ +F LGFS +     +           LLL   L+PP 
Subjt:  RGIFNDGKHGGHSWERST-DQIPVPGCSRFIEGITGIVKGHSASIERESRINIARASAKSIISNFRLGFSEMTSDWLLHRQCRRSTAVSLLLLLLLIPPF

Query:  LQLLTEDRSSRPKASSSGWLL
          LL E+    P+  S G+LL
Subjt:  LQLLTEDRSSRPKASSSGWLL
TrEMBL top hitse value%identityAlignment
A0A0A0LCW8 Uncharacterized protein4.0e-63100Show/hide
Query:  MDRGIFNDGKHGGHSWERSTDQIPVPGCSRFIEGITGIVKGHSASIERESRINIARASAKSIISNFRLGFSEMTSDWLLHRQCRRSTAVSLLLLLLLIPP
        MDRGIFNDGKHGGHSWERSTDQIPVPGCSRFIEGITGIVKGHSASIERESRINIARASAKSIISNFRLGFSEMTSDWLLHRQCRRSTAVSLLLLLLLIPP
Subjt:  MDRGIFNDGKHGGHSWERSTDQIPVPGCSRFIEGITGIVKGHSASIERESRINIARASAKSIISNFRLGFSEMTSDWLLHRQCRRSTAVSLLLLLLLIPP

Query:  FLQLLTEDRSSRPKASSSGWLLRV
        FLQLLTEDRSSRPKASSSGWLLRV
Subjt:  FLQLLTEDRSSRPKASSSGWLLRV
A0A5A7P011 50S ribosomal protein L7/L121.6e-0636.36Show/hide
Query:  RGIFNDGKHGGHSWERST-DQIPVPGCSRFIEGITGIVKGHSASIERESRINIARASAKSIISNFRLGFSEMTSDWLLHRQCRRSTAVSLLLLLLLIPPF
        RG+ +D  H  HS E +  DQ+ VP  SR +E +T +V+  S+S+E ESR ++ R++A++I+ +F LGFS +     +           LLL   L+PP 
Subjt:  RGIFNDGKHGGHSWERST-DQIPVPGCSRFIEGITGIVKGHSASIERESRINIARASAKSIISNFRLGFSEMTSDWLLHRQCRRSTAVSLLLLLLLIPPF

Query:  LQLLTEDRSSRPKASSSGWLL
          LL E+    P+  S G+LL
Subjt:  LQLLTEDRSSRPKASSSGWLL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGGGGCATCTTCAACGACGGAAAGCATGGTGGGCATTCTTGGGAACGTTCTACTGATCAAATACCCGTCCCAGGATGCTCTAGGTTCATCGAAGGAATAACGGG
GATCGTCAAAGGACATTCGGCCAGCATCGAGAGAGAATCTCGGATCAATATCGCAAGAGCGTCGGCCAAATCCATAATCAGCAATTTCCGACTGGGTTTCTCTGAAATGA
CGTCCGATTGGCTTCTCCACCGGCAATGTCGTAGATCCACCGCCGTTTCTCTGCTTCTTCTCCTTCTGCTTATCCCTCCATTTCTGCAGCTTCTTACTGAAGACCGAAGC
AGCCGACCAAAAGCTTCCTCTTCCGGATGGCTTCTTCGTGTGTGA
mRNA sequenceShow/hide mRNA sequence
TGGAACTGTTTCTTCATCCATTTCCAATAAACCCAGTAAAGAAAACACTTGAACAAAAAAAAATTGATAATAAATATATAGCATCTTTGAACTAGAAAACATGTTTTTGA
ATTGAATCCTTCCCTTAGCCAATATCAAAGTTTTAATACAGTCGAAGAACACTTCTAGCAATGGACTGAGCTTGACTTGGTTTCACCTTCCCTGACTCGCCTCTCCGGCT
GCCCCGCAATGGTGTCAAGTAGAATCGAAGAAGTCCATTGTCCACGTTTGTCGGAGATTGTCGAGCACTTCGATTCCTCTCCAACACTGGCTGTGCCTCCTCTTTCTTCT
TCTTCCCATTACCATTAGATTCTGCATTGCTTTTCCTTGAACTACTGAAAGATCCACCAATCATACTTGCACTCCTCCAACTAACACTGCTGTTACTCCTAAACATTTTG
GGATTGAATCCTCCTGCTTTGACATCCCCATTCCGATCCCCACGCAGCTCTGGCCACGACTCCGAATACGACCTCTCCACGCCATTGGGTCTACTACTCTCTCTATCTTC
CTCCTCATCTTTGTTTCCACCTCGCCGGTTAATCAATCCCCAGATTTTCCAACCCTTCCCCCACCCTTTGGACTTTTTCGACTCTTCTTTCCGATTTGCCGTCCCGACCA
CTGAGGCAGCATCCTCGAACGACCCGGAATAGTCATCTCGCAATGAATTGGAATTCGAATCTCTATCTGGAATGCCTAGCTTTGGACCATGAGAGACATCTGTGGTTGCA
GGAGAAACTTTGGCGTTTGAAACAGAGGATTTCATGTCATCAATCTCAGCCACAACCGCCGCGGCAGTCTTTCTGATGGAGTTGGACCGGTCGAGGCTCTTCCGTCGACG
AGAAGAAGAGTCTGAATAGTACTCCCGGGTCTGAGAAGACCCGCCGGGGATATTTTCTTCTTCATTGGTTGAATTTATGGAGTCTTCGACGGGAATTTGGGTATCGGAAC
GGAAAACATGGATAGGGGCATCTTCAACGACGGAAAGCATGGTGGGCATTCTTGGGAACGTTCTACTGATCAAATACCCGTCCCAGGATGCTCTAGGTTCATCGAAGGAA
TAACGGGGATCGTCAAAGGACATTCGGCCAGCATCGAGAGAGAATCTCGGATCAATATCGCAAGAGCGTCGGCCAAATCCATAATCAGCAATTTCCGACTGGGTTTCTCT
GAAATGACGTCCGATTGGCTTCTCCACCGGCAATGTCGTAGATCCACCGCCGTTTCTCTGCTTCTTCTCCTTCTGCTTATCCCTCCATTTCTGCAGCTTCTTACTGAAGA
CCGAAGCAGCCGACCAAAAGCTTCCTCTTCCGGATGGCTTCTTCGTGTGTGAATCGAGATCTATATGATCCTTCATGGTTTTGAACTCCTCTTGTAGCTGCACCGATTCT
GACCCTAATTCAACCTGAATTTCTTCTTCAACAATCTCCTTAACACTGTTTTCAATCACAAAATCCGCCACATTGGGCTGTCCAGAAACCCTAATATCTCCGTCAACGTC
GGGTATCGGTTCAACCCAGGACGAACTGGGGTCCTCCAAATTCTTAGTCTCAACAGCAATTTCAGAAGCAGCAGGAGCAAGAAGCTTAGAAGAGGAAGAAGCGTCCTGTG
AAATGAGAGAGCAGAGAGTGTTACGAAGGCGAACGTCACAAGATTTCCTCTGTGGTTCAAAAATGGCGGTAGAGAAGGCTTCGTTCTTAGAAGCAGAGAAGGATTTAGTC
CGACGAAGCTCAGGAAAAAAGGAAGAGGGTCGATTAGGAGGGGGAGGTCTGAAAAGTGCTCTAAGAGCAGAGGAAGCGGTGGAATGAGGTTTCCGGGAAGAAGAAGAAGA
AGAAGAAGCAGCAGAGGAAGAATCAAGAAGAGAGAGACGCTCACAGAGACACAAAGGACAGAAAGCAGTGAAATGCTCTTGTGGGTGACGTGGGCAAGTGGCGGAAGGAC
GGTGAGGCAACGGCGGTAAGGGAGGAGGAAGTGGTTGTCCGTCGGTGGAGGGATTCATAACAAAGAAGAAGAAACTATGAGAGAATGAAGAAGAAGAAGAAGAAGAAGAA
GAAGGTCATGATAGAATAATGAGAAATTTAGGAGAGATGAAAGTGAAAGAAAGAGAGAGGAAAAAGGGTCATTAGATAAAGAGAGCGATAGCCATAGCCTCTCTTTCTTC
CTTCTTTCTTTGCCCTCTGCAAAGAAAAAATACTCAACATT
Protein sequenceShow/hide protein sequence
MDRGIFNDGKHGGHSWERSTDQIPVPGCSRFIEGITGIVKGHSASIERESRINIARASAKSIISNFRLGFSEMTSDWLLHRQCRRSTAVSLLLLLLLIPPFLQLLTEDRS
SRPKASSSGWLLRV