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CSPI03G34230 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G34230
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTRASH domain-containing protein
Genome locationChr3:29950928..29951264
RNA-Seq ExpressionCSPI03G34230
SyntenyCSPI03G34230
Gene Ontology termsGO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR000988 - Ribosomal protein L24e-related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2994624.1 probable ribosome biogenesis RLP24 [Olea europaea subsp. europaea]2.4e-1578.12Show/hide
Query:  MKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD
        MKRNPRKVKWTKAY  + G   KD+T DSTFEFERKRNRPERYDRN AEE LKAIKKIDK   D
Subjt:  MKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD

KAE8651076.1 hypothetical protein Csa_002111 [Cucumis sativus]3.6e-51100Show/hide
Query:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISP
        MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISP
Subjt:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISP

Query:  MEE
        MEE
Subjt:  MEE

TYJ17996.1 hypothetical protein E1A91_A09G091800v1 [Gossypium mustelinum]2.4e-1577.42Show/hide
Query:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD
        MKRNPRKVKWTKAY      KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Subjt:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD

XP_022723957.1 probable ribosome biogenesis protein RLP24 [Durio zibethinus]2.4e-1577.42Show/hide
Query:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD
        MKRNPRKVKWTKAY    + KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Subjt:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD

XP_022858257.1 probable ribosome biogenesis protein RLP24 [Olea europaea var. sylvestris]2.4e-1578.12Show/hide
Query:  MKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD
        MKRNPRKVKWTKAY  + G   KD+T DSTFEFERKRNRPERYDRN AEE LKAIKKIDK   D
Subjt:  MKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD

TrEMBL top hitse value%identityAlignment
A0A0A0LDW1 Uncharacterized protein1.7e-51100Show/hide
Query:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISP
        MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISP
Subjt:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISP

Query:  MEE
        MEE
Subjt:  MEE

A0A5D2XVV8 Uncharacterized protein1.2e-1577.42Show/hide
Query:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD
        MKRNPRKVKWTKAY      KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Subjt:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD

A0A6J1D3M8 probable ribosome biogenesis protein RLP241.5e-1567.95Show/hide
Query:  MKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEG
        MKRNPRKVKWTKAY  + G   KD+T DSTFEFERKRNRPERYDRN  EE L+AIKKIDK  AD  +ES+   R  +G
Subjt:  MKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEG

A0A6N2LN11 Uncharacterized protein9.0e-1668.42Show/hide
Query:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEG
        MKRNPRKVKWTKAY      KD+T D+TFEFERKRNRPERYDRN AE  LKAIKKIDK      +E +GA RG++G
Subjt:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEG

A0A6P5X8M0 probable ribosome biogenesis protein RLP241.2e-1577.42Show/hide
Query:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD
        MKRNPRKVKWTKAY    + KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Subjt:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD

SwissProt top hitse value%identityAlignment
O22165 Probable ribosome biogenesis protein RLP242.1e-1470.69Show/hide
Query:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        MKRNPRKVKWTKA+      KD+T D+TFEFE+KRNRPERYDRN  E  L AIKKI K
Subjt:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

Q3SZ12 Probable ribosome biogenesis protein RLP243.3e-0743.86Show/hide
Query:  KRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        KRNPRKV+WTKA+      K++T D++FEFE++RN P +Y R    + + A+K++++
Subjt:  KRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

Q6P6G7 Probable ribosome biogenesis protein RLP243.3e-0743.86Show/hide
Query:  KRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        KRNPRKV+WTKA+      K++T D++FEFE++RN P +Y R    + + A+K++++
Subjt:  KRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

Q86B05 Probable ribosome biogenesis protein RLP241.1e-0746.67Show/hide
Query:  MKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        +KRNPRK +WTKA+  + G   K++T D T EFE+KRNRP +YDR      + A+ ++ K
Subjt:  MKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

Q99L28 Probable ribosome biogenesis protein RLP243.3e-0743.86Show/hide
Query:  KRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        KRNPRKV+WTKA+      K++T D++FEFE++RN P +Y R    + + A+K++++
Subjt:  KRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

Arabidopsis top hitse value%identityAlignment
AT2G44860.1 Ribosomal protein L24e family protein1.5e-1570.69Show/hide
Query:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        MKRNPRKVKWTKA+      KD+T D+TFEFE+KRNRPERYDRN  E  L AIKKI K
Subjt:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

AT2G44860.2 Ribosomal protein L24e family protein1.5e-1570.69Show/hide
Query:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        MKRNPRKVKWTKA+      KD+T D+TFEFE+KRNRPERYDRN  E  L AIKKI K
Subjt:  MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGAAATCCCCGTAAAGTAAAATGGACCAAGGCATATATAGGAGGTTGCATGGAAAAGGATGTGACATGGGACTCAACTTTTGAGTTCGAGAGGAAGCGCAATAG
ACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCACTGAAGGCTATAAAGAAGATTGATAAAGACACAGCGGATGCGTGGAAAGAAAGCAAAGGGGCTAGAAGAGGAT
CAGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGGGGTACCAATCAGAAGCAGAGCAAAATCAGCCCAATGGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGAAATCCCCGTAAAGTAAAATGGACCAAGGCATATATAGGAGGTTGCATGGAAAAGGATGTGACATGGGACTCAACTTTTGAGTTCGAGAGGAAGCGCAATAG
ACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCACTGAAGGCTATAAAGAAGATTGATAAAGACACAGCGGATGCGTGGAAAGAAAGCAAAGGGGCTAGAAGAGGAT
CAGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGGGGTACCAATCAGAAGCAGAGCAAAATCAGCCCAATGGAAGAATGA
Protein sequenceShow/hide protein sequence
MKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISPMEE