CuGenDBv2

Gene ID	CSPI03G34360
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	SOSS complex subunit B-like protein
Genome location	Chr3:30096619..30096819
RNA-Seq Expression	CSPI03G34360
Synteny	CSPI03G34360
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0010212 - response to ionizing radiation (biological process) GO:0070876 - SOSS complex (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]

5.2e-19

89.09

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Query:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
        A  + KIEKVGEFKMVFVETPNMSEIHWVP +INSNKYVKESVLSPYSRIFPPIR
Subjt:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

XP_008450623.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo]

5.2e-19

89.09

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Query:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
        A  + KIEKVGEFKMVFVETPNMSEIHWVP +INSNKYVKESVLSPYSRIFPPIR
Subjt:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]

3.7e-17

83.64

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Query:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
        A  + KIEKVGEF MVFVETPNMSEIHWVP + NS KYVKESVLSPYSRIFPPIR
Subjt:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]

4.8e-17

81.82

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Query:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
        A  + K+EKVGEF MVFVETPNMSEIHWVP + NS KYVKESVLSPYSRIFPPIR
Subjt:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]

2.0e-18

87.27

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Query:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
        A  + KIEKVGEFKMVFVETPNMSEIHWVP + NSNKYVKESVLSPYSRIFPPIR
Subjt:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LDX2 Uncharacterized protein

2.0e-29

100

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Query:  MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
        MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
Subjt:  MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

A0A0A0LW03 Uncharacterized protein

2.5e-19

89.09

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Query:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
        A  + KIEKVGEFKMVFVETPNMSEIHWVP +INSNKYVKESVLSPYSRIFPPIR
Subjt:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

A0A1S3BPN4 SOSS complex subunit B homolog

2.5e-19

89.09

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Query:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
        A  + KIEKVGEFKMVFVETPNMSEIHWVP +INSNKYVKESVLSPYSRIFPPIR
Subjt:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

A0A5D3CIR3 SOSS complex subunit B-like protein

2.5e-19

89.09

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Query:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
        A  + KIEKVGEFKMVFVETPNMSEIHWVP +INSNKYVKESVLSPYSRIFPPIR
Subjt:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

A0A6J1HAL0 SOSS complex subunit B homolog

1.8e-17

83.64

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Query:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR
        A  + KIEKVGEF MVFVETPNMSEIHWVP + NS KYVKESVLSPYSRIFPPIR
Subjt:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G63690.1 Nucleic acid-binding, OB-fold-like protein

7.7e-13

53.7

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Query:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPI
        A  + K+EK+GEF + FVETPN+SEI W+P   N  +Y++  V+S YSRIFPP+
Subjt:  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPI

Sequences

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CDS sequence

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ATGATGATACCTCTCAAGGATTCGGTGCCAGCAGCCCAGAACAAAGTGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGAT
CCATTGGGTTCCAGGCAGCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCCCCTTATTCTCGCATCTTTCCTCCCATTCGTTGA

mRNA sequence

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Protein sequence

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MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR

CSPI03G34360 (gene) of Cucumber (PI 183967) v1 genome