CuGenDBv2

Gene ID	CSPI03G34530
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty1-copia retrotransposon protein
Genome location	Chr3:30329520..30330379
RNA-Seq Expression	CSPI03G34530
Synteny	CSPI03G34530
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036643.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

3.6e-64

80.75

Show/hide

Query:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG
        FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYG
Subjt:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG

Query:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP
        GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Subjt:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP

KAA0042223.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

6.1e-64

80.12

Show/hide

Query:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG
        FFEQLEVDYVL  + P     PP    TS DPESSTG L  +   DQ KK   IDPEKY KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYG
Subjt:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG

Query:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP
        GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Subjt:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP

TYK04957.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

3.6e-64

80.75

Show/hide

Query:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG
        FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYG
Subjt:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG

Query:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP
        GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Subjt:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP

TYK11996.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

3.6e-64

80.75

Show/hide

Query:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG
        FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYG
Subjt:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG

Query:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP
        GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Subjt:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP

TYK26791.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

6.1e-64

80.12

Show/hide

Query:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG
        FFEQLEVDYVL  + P     PP    TS DPESSTG L  +   DQ KK   IDPEKY KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYG
Subjt:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG

Query:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP
        GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Subjt:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T166 Ty1-copia retrotransposon protein

1.7e-64

80.75

Show/hide

Query:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG
        FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYG
Subjt:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG

Query:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP
        GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Subjt:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP

A0A5A7TG73 Ty1-copia retrotransposon protein

2.9e-64

80.12

Show/hide

Query:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG
        FFEQLEVDYVL  + P     PP    TS DPESSTG L  +   DQ KK   IDPEKY KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYG
Subjt:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG

Query:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP
        GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Subjt:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP

A0A5D3BZH6 Ty1-copia retrotransposon protein

1.7e-64

80.75

Show/hide

Query:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG
        FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYG
Subjt:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG

Query:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP
        GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Subjt:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP

A0A5D3CNJ2 Ty1-copia retrotransposon protein

1.7e-64

80.75

Show/hide

Query:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG
        FFEQLEVDYVL  + P     PP    TS DPESSTG L  V   DQ KK   IDPEKY KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYG
Subjt:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG

Query:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP
        GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Subjt:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP

A0A5D3DSQ3 Ty1-copia retrotransposon protein

2.9e-64

80.12

Show/hide

Query:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG
        FFEQLEVDYVL  + P     PP    TS DPESSTG L  +   DQ KK   IDPEKY KDNKTVRGHLLNHM+D +FDLFV+QKSAKDIW TLESRYG
Subjt:  FFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSL--VVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYG

Query:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP
        GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVL+EKFPP
Subjt:  GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

3.4e-12

24.77

Show/hide

Query:  QNFATFERKKLQCRSKTKFYPTCL-NWSHSTEKTTIAGLR------------SYWS-----FFEQLEVDYVLIVE-PPIDPLAPPIDPPTSFDPESSTGS
        +NFA  E    QC+SK K       + S + +K +  G               YW+     F +QL++ YVL    P I     P   P       +TG 
Subjt:  QNFATFERKKLQCRSKTKFYPTCL-NWSHSTEKTTIAGLR------------SYWS-----FFEQLEVDYVLIVE-PPIDPLAPPIDPPTSFDPESSTGS

Query:  LVVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQ-KSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANV
                        +K+ +D+     HL+N ++D ++  +  + K AK++W  L+  Y  D++  K+  V K+++F+M +++P++EQ+  +  +  ++
Subjt:  LVVTADQAKKSSPIDPEKYKKDNKTVRGHLLNHMTDAVFDLFVIQ-KSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANV

Query:  LSEGMKMCEILQANVLVEKFPP
        +S GM + E    + ++ KFPP
Subjt:  LSEGMKMCEILQANVLVEKFPP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTTATCACGACGCAGCAACTGATCTTGATCGTCATCATCAAAATTTTGCAACATTTGAAAGAAAAAAATTACAATGTCGATCAAAAACAAAGTTCTACCCGACCTG
TCTAAACTGGAGCCACTCGACGGAGAAAACTACCATCGCTGGTCTCAGAAGTTATTGGTCTTTTTTCGAACAACTTGAAGTCGATTATGTTCTCATCGTCGAACCGCCAA
TCGATCCTCTGGCACCACCAATCGATCCTCCAACATCTTTTGATCCAGAATCATCCACGGGATCCCTTGTCGTCACTGCTGACCAAGCAAAGAAATCATCTCCAATTGAT
CCCGAGAAGTACAAGAAAGACAATAAGACTGTTCGTGGGCACCTGTTGAACCATATGACGGATGCCGTGTTTGACTTGTTTGTAATCCAAAAATCTGCCAAGGACATCTG
GTGCACTCTGGAGTCTCGCTATGGTGGAGACGACGCTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTGCAGTTTCAAATGACAGATGATAAGCCAGTTGTGGAACAGA
TACATGAGTATGAAAACCTTGTGGCCAATGTTCTATCTGAAGGTATGAAGATGTGTGAGATACTTCAAGCTAATGTTTTAGTGGAAAAATTTCCTCCCTATGGAGCGACT
ACCAAAATCACTTGA

mRNA sequence

Show/hide mRNA sequence

AAAACATCTTATCTCTACCTTTCTCTCTAGATCTTCTTCTCTACCCATAGTTCTGAGCAATTCTTCATCGTTTCTATTCCTATTTCTGGTGAGTGCAAGTTTGGAATTGG
GAGTTGTGTTAACCTTGGGGAGCAACCAACAGTGAGATTAGCACCACGGTCTAGCTGAATTTTGCTTTCAAGGCAATGATTTATCACGACGCAGCAACTGATCTTGATCG
TCATCATCAAAATTTTGCAACATTTGAAAGAAAAAAATTACAATGTCGATCAAAAACAAAGTTCTACCCGACCTGTCTAAACTGGAGCCACTCGACGGAGAAAACTACCA
TCGCTGGTCTCAGAAGTTATTGGTCTTTTTTCGAACAACTTGAAGTCGATTATGTTCTCATCGTCGAACCGCCAATCGATCCTCTGGCACCACCAATCGATCCTCCAACA
TCTTTTGATCCAGAATCATCCACGGGATCCCTTGTCGTCACTGCTGACCAAGCAAAGAAATCATCTCCAATTGATCCCGAGAAGTACAAGAAAGACAATAAGACTGTTCG
TGGGCACCTGTTGAACCATATGACGGATGCCGTGTTTGACTTGTTTGTAATCCAAAAATCTGCCAAGGACATCTGGTGCACTCTGGAGTCTCGCTATGGTGGAGACGACG
CTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTGCAGTTTCAAATGACAGATGATAAGCCAGTTGTGGAACAGATACATGAGTATGAAAACCTTGTGGCCAATGTTCTA
TCTGAAGGTATGAAGATGTGTGAGATACTTCAAGCTAATGTTTTAGTGGAAAAATTTCCTCCCTATGGAGCGACTACCAAAATCACTTGA

Protein sequence

Show/hide protein sequence

MIYHDAATDLDRHHQNFATFERKKLQCRSKTKFYPTCLNWSHSTEKTTIAGLRSYWSFFEQLEVDYVLIVEPPIDPLAPPIDPPTSFDPESSTGSLVVTADQAKKSSPID
PEKYKKDNKTVRGHLLNHMTDAVFDLFVIQKSAKDIWCTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLVEKFPPYGAT
TKIT

CSPI03G34530 (gene) of Cucumber (PI 183967) v1 genome