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CSPI03G34990 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G34990
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionreplication protein A 14 kDa subunit B
Genome locationChr3:30658392..30660955
RNA-Seq ExpressionCSPI03G34990
SyntenyCSPI03G34990
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149201.1 replication protein A 14 kDa subunit B [Cucumis sativus]2.8e-5198.11Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTST+NQLCLFANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

XP_008442847.1 PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo]2.9e-4893.4Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+ GKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTST+NQLC FANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        FK LFI
Subjt:  FKPLFI

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]5.5e-4789.62Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TSNPSVFVNAELLR+YVGRRVRAVIQV SE NGV++GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTST+NQLC  ANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]3.2e-4790.57Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TSNPSVFVNAELLRLYVGRRVRAVIQV SE NGV++GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTST+NQLC  ANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

XP_038905423.1 replication protein A 14 kDa subunit B [Benincasa hispida]2.9e-4893.4Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+FGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTST+NQLC  ANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        FK LFI
Subjt:  FKPLFI

TrEMBL top hitse value%identityAlignment
A0A0A0LGP0 Uncharacterized protein1.4e-5198.11Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTST+NQLCLFANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

A0A1S3B7E2 replication protein A 14 kDa subunit B1.4e-4893.4Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+ GKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTST+NQLC FANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        FK LFI
Subjt:  FKPLFI

A0A6J1FQS1 replication protein A 14 kDa subunit B-like5.9e-4789.62Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TSNPSVFVNAELLRLYVGRRVRAVIQV SE NGV++GKSTD+NQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTST+N+LC  ANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

A0A6J1J6J3 replication protein A 14 kDa subunit B-like2.7e-4789.62Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TSNPSVFVNAELLR+YVGRRVRAVIQV SE NGV++GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTST+NQLC  ANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

A0A6J1L034 replication protein A 14 kDa subunit B-like5.9e-4789.62Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TSNPSVFVNAELLRLYVGRRVRAVIQV SE NGV++GKSTD+NQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTST+N+LC  ANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B1.9e-3465.09Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TS+P+ FVN  LLR Y+G++VRAVIQV+    G V GKSTDD QI VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   YN+LC  ANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI

Q9LXK1 Replication protein A 14 kDa subunit A1.2e-3161.68Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANG
        M TS+PS FVN  LLR ++G++VR VIQV     G V GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  YN+LC  ANG
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

Q9SDK9 Replication protein A 14 kDa subunit3.8e-2750Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TS P+ FVN E+L+++VGRRVR V+Q   E  G++ G+STD +Q+T+KG+   P+S +VE+IGIA+ +++IRA+V T+FG++FD + +N LC  ANG+
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
         K LF+
Subjt:  FKPLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein8.2e-3361.68Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANG
        M TS+PS FVN  LLR ++G++VR VIQV     G V GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  YN+LC  ANG
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein8.2e-3361.68Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANG
        M TS+PS FVN  LLR ++G++VR VIQV     G V GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  YN+LC  ANG
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.4e-3565.09Show/hide
Query:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE
        M TS+P+ FVN  LLR Y+G++VRAVIQV+    G V GKSTDD QI VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   YN+LC  ANGE
Subjt:  MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAAGCAATGGAGTCGT
ATTTGGTAAATCAACAGATGACAACCAGATCACTGTCAAAGGTTCCCCACCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGGATTGCTGATACCGACAAATCCATTC
GAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTACAATCAACTATGTCTGTTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGA
mRNA sequenceShow/hide mRNA sequence
GGAACTTTAATTTTGCCTCTTTCAAAAATCGCGCGCTCTTTCGATCGATTCGATTGCCATTTCCGGCGAACTCTCCGATCGCTGAATCAGATGGGTACATCAAACCCTTC
AGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAAGCAATGGAGTCGTATTTGGTAAATCAACAGATG
ACAACCAGATCACTGTCAAAGGTTCCCCACCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGGATTGCTGATACCGACAAATCCATTCGAGCTGATGTGTGGACCAAT
TTTGGTGATTCATTTGATACATCTACCTACAATCAACTATGTCTGTTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGATTTTCAAGCCAGACATTCTTTAGCAAGAA
ACCTCATGGTCTACCTTCCCCTCCCGTGACACGCTAAGTCAAGAATGTTTTCTTCATTTTCTTCTTAAAGCATCTGAGATTTATCGTTCATATGGTATTGCACTTTTCAG
GTAAGAGATGTATAAAATTTGAATATGCAACGTATGTTTGTGTTAGAATATACTAGAATGAACATTGCTTCAAAAATGATAAAGAGAAATTATATTCTAATCAATTTCTT
TTGTAGTTTTCAGGTTAGGAAGCCTTTGTGAATGCAAATAAACTGAACCGATTATTACAAACTGACAAACTATCATCTTTTAGCTGAAGATGTTATGAAAAACATAATCT
AGGGAATATATGCCAACAA
Protein sequenceShow/hide protein sequence
MGTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTYNQLCLFANGEFKPLFI