; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G35170 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G35170
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA binding protein, putative
Genome locationChr3:30754864..30757739
RNA-Seq ExpressionCSPI03G35170
SyntenyCSPI03G35170
Gene Ontology termsGO:1901002 - positive regulation of response to salt stress (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149190.1 small RNA-binding protein 11, chloroplastic [Cucumis sativus]3.0e-6698.51Show/hide
Query:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
        MEAIRKAMAITSNRRVLPSLFPPPSRLVS+R IATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
Subjt:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP

Query:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
        LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
Subjt:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK

XP_008442872.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X1 [Cucumis melo]9.6e-6595.52Show/hide
Query:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
        MEAIRKA+AI+SNRRVLPSLFPPPSRLVSFR IATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFAS+DEAHTALSEMNGKP
Subjt:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP

Query:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
        LNGRVIFVNYAKPTTS+RG+IPIARGPPEEKTDK
Subjt:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK

XP_016899606.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X2 [Cucumis melo]3.4e-6294.03Show/hide
Query:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
        MEAIRKA+AI+SNRRVLPSLFPPPSRLVSFR IATKLFVGGLSYYTTDKGLSEAFSQYGQVIE  VVMDRVSDKSKGFGFVTFAS+DEAHTALSEMNGKP
Subjt:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP

Query:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
        LNGRVIFVNYAKPTTS+RG+IPIARGPPEEKTDK
Subjt:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK

XP_023005174.1 small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima]8.2e-5684.33Show/hide
Query:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
        M AIRKAMAI+SNR VLPS+F PPSRL+SFR IA+KLFVGGLS+YT+DKGLSEAFSQYGQV+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK 
Subjt:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP

Query:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
        LNGRVIFV+YAKPT++ RG IPIARGPPEEKTD+
Subjt:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK

XP_038903502.1 small RNA-binding protein 11, chloroplastic [Benincasa hispida]2.1e-5686.57Show/hide
Query:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
        MEAIRKAMAI+SNR VLPSLF  PSRLVSFR IA+KLFVGGLS+YTTDKGLSEAFSQYGQV+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGKP
Subjt:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP

Query:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
        LNGRVIFV+YAKPT+  R  IPIARGPPEEKTD+
Subjt:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK

TrEMBL top hitse value%identityAlignment
A0A0A0LE31 RRM domain-containing protein1.4e-6698.51Show/hide
Query:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
        MEAIRKAMAITSNRRVLPSLFPPPSRLVS+R IATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
Subjt:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP

Query:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
        LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
Subjt:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK

A0A1S3B7I3 glycine-rich RNA-binding protein 4, mitochondrial isoform X14.7e-6595.52Show/hide
Query:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
        MEAIRKA+AI+SNRRVLPSLFPPPSRLVSFR IATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFAS+DEAHTALSEMNGKP
Subjt:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP

Query:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
        LNGRVIFVNYAKPTTS+RG+IPIARGPPEEKTDK
Subjt:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK

A0A1S4DUE5 glycine-rich RNA-binding protein 4, mitochondrial isoform X21.7e-6294.03Show/hide
Query:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
        MEAIRKA+AI+SNRRVLPSLFPPPSRLVSFR IATKLFVGGLSYYTTDKGLSEAFSQYGQVIE  VVMDRVSDKSKGFGFVTFAS+DEAHTALSEMNGKP
Subjt:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP

Query:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
        LNGRVIFVNYAKPTTS+RG+IPIARGPPEEKTDK
Subjt:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK

A0A5A7TKK4 Glycine-rich RNA-binding protein 44.7e-6595.52Show/hide
Query:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
        MEAIRKA+AI+SNRRVLPSLFPPPSRLVSFR IATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFAS+DEAHTALSEMNGKP
Subjt:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP

Query:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
        LNGRVIFVNYAKPTTS+RG+IPIARGPPEEKTDK
Subjt:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK

A0A6J1KYF3 small RNA-binding protein 11, chloroplastic-like4.0e-5684.33Show/hide
Query:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP
        M AIRKAMAI+SNR VLPS+F PPSRL+SFR IA+KLFVGGLS+YT+DKGLSEAFSQYGQV+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK 
Subjt:  MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKP

Query:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK
        LNGRVIFV+YAKPT++ RG IPIARGPPEEKTD+
Subjt:  LNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK

SwissProt top hitse value%identityAlignment
Q9FFZ6 Small RNA-binding protein 11, chloroplastic1.5e-3167.33Show/hide
Query:  RAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTS--SRGAIPIARGPP
        R +A+KLF+GGLS+ TT++GLSEAFS+ GQV+EA +VMDRVSD+SKGFGFVTFAS DEA  AL E NG+ LNGR IFV+YAK   S    G  PIARGPP
Subjt:  RAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTS--SRGAIPIARGPP

Query:  E
        +
Subjt:  E

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial2.0e-1750.56Show/hide
Query:  ATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGAIP
        +T LFV GLS  TT +GL  AF+Q+G+V +A VV DRVS  SKGFGFV +A+L+++   ++ M+GK L+G VIF  YA+P   S+   P
Subjt:  ATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGAIP

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial7.0e-1843.3Show/hide
Query:  PSRLVSFRAI-ATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRG
        PS   + R + ++KLF+GG++Y   +  L EAF++YG+V++  V++DR + +S+GFGFVTF S + A +A+  ++G+ L+GRV+ VNYA   TS  G
Subjt:  PSRLVSFRAI-ATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial7.5e-2051.04Show/hide
Query:  PPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSS
        P  S L S R +++KLFVGGLS+ T D  L +AF+ +G+V EATV+ DR + +S+GFGFV+F+  D A+ A+ EM+GK LNGR I VN A   +S+
Subjt:  PPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSS

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial5.4e-1847.22Show/hide
Query:  ITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVN
        I+SN  V     P  S L S R ++TKLF+GGLS+ T D  L +AF+ +G V++A V++DR + +S+GFGFV F     A  A+SEM+GK LNGR I VN
Subjt:  ITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVN

Query:  YAKPTTSS
         A    S+
Subjt:  YAKPTTSS

Arabidopsis top hitse value%identityAlignment
AT3G23830.1 glycine-rich RNA-binding protein 45.3e-2151.04Show/hide
Query:  PPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSS
        P  S L S R +++KLFVGGLS+ T D  L +AF+ +G+V EATV+ DR + +S+GFGFV+F+  D A+ A+ EM+GK LNGR I VN A   +S+
Subjt:  PPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSS

AT3G23830.2 glycine-rich RNA-binding protein 45.3e-2151.04Show/hide
Query:  PPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSS
        P  S L S R +++KLFVGGLS+ T D  L +AF+ +G+V EATV+ DR + +S+GFGFV+F+  D A+ A+ EM+GK LNGR I VN A   +S+
Subjt:  PPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSS

AT4G13850.1 glycine-rich RNA-binding protein 23.8e-1947.22Show/hide
Query:  ITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVN
        I+SN  V     P  S L S R ++TKLF+GGLS+ T D  L +AF+ +G V++A V++DR + +S+GFGFV F     A  A+SEM+GK LNGR I VN
Subjt:  ITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVN

Query:  YAKPTTSS
         A    S+
Subjt:  YAKPTTSS

AT4G13850.2 glycine-rich RNA-binding protein 23.8e-1947.22Show/hide
Query:  ITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVN
        I+SN  V     P  S L S R ++TKLF+GGLS+ T D  L +AF+ +G V++A V++DR + +S+GFGFV F     A  A+SEM+GK LNGR I VN
Subjt:  ITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVN

Query:  YAKPTTSS
         A    S+
Subjt:  YAKPTTSS

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein1.0e-3267.33Show/hide
Query:  RAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTS--SRGAIPIARGPP
        R +A+KLF+GGLS+ TT++GLSEAFS+ GQV+EA +VMDRVSD+SKGFGFVTFAS DEA  AL E NG+ LNGR IFV+YAK   S    G  PIARGPP
Subjt:  RAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTS--SRGAIPIARGPP

Query:  E
        +
Subjt:  E


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCGATCAGAAAAGCGATGGCAATAACCTCCAACCGTCGTGTTCTTCCCTCTCTATTTCCTCCGCCGTCTCGGCTCGTCTCTTTTAGAGCCATAGCTACGAAGCT
TTTTGTTGGTGGACTCTCATATTACACTACGGACAAGGGACTGTCAGAAGCCTTTTCCCAATACGGTCAGGTTATTGAAGCTACAGTTGTGATGGACAGAGTCTCTGATA
AGTCAAAGGGATTCGGATTTGTCACCTTTGCATCCTTAGACGAAGCGCATACGGCACTGTCAGAGATGAACGGAAAGCCTTTGAACGGAAGAGTTATTTTTGTGAACTAT
GCAAAACCAACAACCTCTTCTCGTGGTGCAATTCCTATAGCGAGGGGACCCCCTGAGGAGAAAACTGATAAATGA
mRNA sequenceShow/hide mRNA sequence
CGCCGTCCCTAAAACGAACGTCTGCCGTTTTTTCCCCCGCTCTCTCGACTCTAAGATGAACGCATAGCATCACTCTGATACTACTACCATGGAGGCGATCAGAAAAGCGA
TGGCAATAACCTCCAACCGTCGTGTTCTTCCCTCTCTATTTCCTCCGCCGTCTCGGCTCGTCTCTTTTAGAGCCATAGCTACGAAGCTTTTTGTTGGTGGACTCTCATAT
TACACTACGGACAAGGGACTGTCAGAAGCCTTTTCCCAATACGGTCAGGTTATTGAAGCTACAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTTGT
CACCTTTGCATCCTTAGACGAAGCGCATACGGCACTGTCAGAGATGAACGGAAAGCCTTTGAACGGAAGAGTTATTTTTGTGAACTATGCAAAACCAACAACCTCTTCTC
GTGGTGCAATTCCTATAGCGAGGGGACCCCCTGAGGAGAAAACTGATAAATGATTGCTAAAAAGTTCACTTTCTGCCATTTATCAAAAAGAAATTAGCTGAAAAGAAGAG
AACAATCATTGAAGCTGCGCGTAGAAAGTGTGATTCAAACATGTCTTTTCAAGAATTTGGTTCATGTCAGAGACGTGTTTAAAGCTTCGGGAAAAAGAGGTCAGCTTGCT
GGAATTTTTAAAAATATTTATAATTTTCTTCTTATTGGTTAAGTAGTACTCTATTAAGTATGGTTAAACTGATGTCCAGACATTTGTCCATATATTTTCTAAGTTTGCTG
ATTGCCATATAGTGATAATAATATTTCTTTTTGCAGCAATTAGACTCACGG
Protein sequenceShow/hide protein sequence
MEAIRKAMAITSNRRVLPSLFPPPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNY
AKPTTSSRGAIPIARGPPEEKTDK