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CSPI03G35970 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G35970
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionVQ domain-containing protein
Genome locationChr3:31334605..31334952
RNA-Seq ExpressionCSPI03G35970
SyntenyCSPI03G35970
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043778.1 protein MKS1-like [Cucumis melo var. makuwa]8.4e-3880.87Show/hide
Query:  MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND
        MM+   AARN SQLRGPRPPPLTVNK SSTNI KKSTKN      NQR+RRSPIIIYLRSPK+IHVRPEEFKSFVQRLTGNRSSVAVVASSCSA+GMI D
Subjt:  MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND

Query:  ---EEFVSVCNCIPS
           EEF S CNCIPS
Subjt:  ---EEFVSVCNCIPS

KAE8125233.1 hypothetical protein FH972_020066 [Carpinus fangiana]3.0e-1150.53Show/hide
Query:  AARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDE
        +++   QL+GPRP  L V KSS+     K  KN P P    R R SP+IIYL SPKVIHVRPEEF   VQRLTGN  +  + +S  S+  M+ DE
Subjt:  AARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDE

KAG6596645.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.1e-2770.8Show/hide
Query:  SAAARNH--SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND--
        ++AARN    +LRGPRPPPLTVNK SST I KKST  N  PI N   RR P+I+YLRSPK+IHVRPEEFKSFVQRLTGN SSVAVVA+S SATGMI D  
Subjt:  SAAARNH--SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND--

Query:  -EEFVSVCNCIPS
         E  VS CN IPS
Subjt:  -EEFVSVCNCIPS

KGN59247.1 hypothetical protein Csa_002000 [Cucumis sativus]1.9e-53100Show/hide
Query:  MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND
        MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND
Subjt:  MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND

Query:  EEFVSVCNCIPS
        EEFVSVCNCIPS
Subjt:  EEFVSVCNCIPS

XP_008443599.1 PREDICTED: protein MKS1-like [Cucumis melo]1.2e-3683.49Show/hide
Query:  AARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEF
        AARN SQLRGPRPPPLTVNK SSTNI KKSTKN      NQR+RRSPIIIYLRSPK+IHVRPEEFKSFVQRLTGNRSSVAVVASSCSA+GMI D   EEF
Subjt:  AARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEF

Query:  VSVCNCIPS
         S CNCIPS
Subjt:  VSVCNCIPS

TrEMBL top hitse value%identityAlignment
A0A0A0LEW5 VQ domain-containing protein9.0e-54100Show/hide
Query:  MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND
        MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND
Subjt:  MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND

Query:  EEFVSVCNCIPS
        EEFVSVCNCIPS
Subjt:  EEFVSVCNCIPS

A0A1S3B975 protein MKS1-like5.9e-3783.49Show/hide
Query:  AARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEF
        AARN SQLRGPRPPPLTVNK SSTNI KKSTKN      NQR+RRSPIIIYLRSPK+IHVRPEEFKSFVQRLTGNRSSVAVVASSCSA+GMI D   EEF
Subjt:  AARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEF

Query:  VSVCNCIPS
         S CNCIPS
Subjt:  VSVCNCIPS

A0A2N9GB07 VQ domain-containing protein7.7e-1355.06Show/hide
Query:  SAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCS
        S   + + QL+GPRP PLTVNKSS+        K  PLP    R R SP+IIYL+SPKVIHVRPEEF   VQ+LTGN++   V A S S
Subjt:  SAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCS

A0A5D3DP92 Protein MKS1-like4.1e-3880.87Show/hide
Query:  MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND
        MM+   AARN SQLRGPRPPPLTVNK SSTNI KKSTKN      NQR+RRSPIIIYLRSPK+IHVRPEEFKSFVQRLTGNRSSVAVVASSCSA+GMI D
Subjt:  MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND

Query:  ---EEFVSVCNCIPS
           EEF S CNCIPS
Subjt:  ---EEFVSVCNCIPS

A0A5N6RVJ8 VQ domain-containing protein1.5e-1150.53Show/hide
Query:  AARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDE
        +++   QL+GPRP  L V KSS+     K  KN P P    R R SP+IIYL SPKVIHVRPEEF   VQRLTGN  +  + +S  S+  M+ DE
Subjt:  AARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDE

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B1.3e-0434.74Show/hide
Query:  GPRPPPLTVNKSSSTNISKKS-TKNNPLPISNQRHRR---------SPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND
        GP+P PL V   S   I K      +P P   Q H++          P+ IY  +P++IH  P  F + VQRLTG  S+    +SS S+T    D
Subjt:  GPRPPPLTVNKSSSTNISKKS-TKNNPLPISNQRHRR---------SPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND

Q8LGD5 Protein MKS18.8e-0642.31Show/hide
Query:  QLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRH-----RRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSV
        Q+ GPRP PL+V+K S      K    +P P  N+        R P++IY  SPKV+H    EF + VQRLTG  S V
Subjt:  QLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRH-----RRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSV

Q9CA36 VQ motif-containing protein 8, chloroplastic3.9e-0644.93Show/hide
Query:  SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTG
        +++ G RP  L +   S T     S K+ P P      R SP+IIY  SPKVIH R E+F + VQRLTG
Subjt:  SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTG

Q9LS54 VQ motif-containing protein 204.4e-0542.19Show/hide
Query:  PRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTG
        P PP L VNK S  ++ KK    +P   S+    R P+IIY  +P++IH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTG

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding9.0e-0634.74Show/hide
Query:  GPRPPPLTVNKSSSTNISKKS-TKNNPLPISNQRHRR---------SPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND
        GP+P PL V   S   I K      +P P   Q H++          P+ IY  +P++IH  P  F + VQRLTG  S+    +SS S+T    D
Subjt:  GPRPPPLTVNKSSSTNISKKS-TKNNPLPISNQRHRR---------SPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND

AT1G21326.1 VQ motif-containing protein1.8e-0636.84Show/hide
Query:  GPRPPPLTVNKSSSTNISKKS-TKNNPLPISNQRHRR---------SPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND
        GPRP PL V   S   I K      +P P   Q H++          P+IIY  SP++IH  P  F + VQRLTG  S+    +S  S+T    D
Subjt:  GPRPPPLTVNKSSSTNISKKS-TKNNPLPISNQRHRR---------SPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMIND

AT1G68450.1 VQ motif-containing protein2.8e-0744.93Show/hide
Query:  SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTG
        +++ G RP  L +   S T     S K+ P P      R SP+IIY  SPKVIH R E+F + VQRLTG
Subjt:  SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTG

AT3G18360.1 VQ motif-containing protein3.1e-0642.19Show/hide
Query:  PRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTG
        P PP L VNK S  ++ KK    +P   S+    R P+IIY  +P++IH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTG

AT3G18690.1 MAP kinase substrate 16.3e-0742.31Show/hide
Query:  QLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRH-----RRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSV
        Q+ GPRP PL+V+K S      K    +P P  N+        R P++IY  SPKV+H    EF + VQRLTG  S V
Subjt:  QLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRH-----RRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATAACTTCCGCCGCCGCAAGGAATCATTCGCAATTGCGAGGGCCAAGGCCACCGCCATTGACGGTGAACAAATCCAGCTCCACTAACATTTCCAAGAAATCAAC
GAAGAATAATCCTCTTCCGATTTCGAATCAACGCCATCGCCGTTCTCCGATAATCATTTACCTTCGATCCCCAAAGGTCATCCATGTTCGGCCTGAGGAGTTCAAAAGCT
TCGTTCAACGTCTCACTGGAAATCGATCCTCTGTAGCCGTCGTCGCCTCATCCTGTTCTGCTACTGGAATGATTAATGATGAGGAATTTGTATCCGTGTGCAATTGCATT
CCGTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGATAACTTCCGCCGCCGCAAGGAATCATTCGCAATTGCGAGGGCCAAGGCCACCGCCATTGACGGTGAACAAATCCAGCTCCACTAACATTTCCAAGAAATCAAC
GAAGAATAATCCTCTTCCGATTTCGAATCAACGCCATCGCCGTTCTCCGATAATCATTTACCTTCGATCCCCAAAGGTCATCCATGTTCGGCCTGAGGAGTTCAAAAGCT
TCGTTCAACGTCTCACTGGAAATCGATCCTCTGTAGCCGTCGTCGCCTCATCCTGTTCTGCTACTGGAATGATTAATGATGAGGAATTTGTATCCGTGTGCAATTGCATT
CCGTCGTAGCTTCCGCCG
Protein sequenceShow/hide protein sequence
MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDEEFVSVCNCI
PS