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CSPI03G36800 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G36800
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionArabinogalactan peptide 23
Genome locationChr3:31940061..31940240
RNA-Seq ExpressionCSPI03G36800
SyntenyCSPI03G36800
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043704.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa]3.3e-0981.67Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL
        +VTCAVLVAAAAVSATMA SEGPA AP+     SSDA AALPAVGAFIGASL+SFFAYYL
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL

KGN59476.2 hypothetical protein Csa_001154 [Cucumis sativus]1.8e-0795.45Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAV
        +VTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPA+
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAV

OMO63159.1 arabinogalactan peptide 23-like protein [Corchorus capsularis]3.8e-0560Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL
        +++CAV+VAAA++SA +A  +    APAAAPGP+SDAA+ALP +G+ +GASL+SF AYYL
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL

PKI47791.1 hypothetical protein CRG98_031820 [Punica granatum]1.0e-0566.67Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL
        +++CA+LV AA++SA +A +EGPAAAP  APGPSS A+AALPAVG+ +GAS+LSF AYYL
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL

XP_038906349.1 arabinogalactan protein 23 [Benincasa hispida]9.1e-0777.05Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSD-AAAALPAVGAFIGASLLSFFAYYL
        +VTCAVLV+AA +SATMA  EG    PA APG SSD AAAALPAVGAFIGASL SFFAYYL
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSD-AAAALPAVGAFIGASLLSFFAYYL

TrEMBL top hitse value%identityAlignment
A0A1R3GYJ0 Arabinogalactan peptide 23-like protein1.8e-0560Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL
        +++CAV+VAAA++SA +A  +    APAAAPGP+SDAA+ALP +G+ +GASL+SF AYYL
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL

A0A2I0IUW3 Uncharacterized protein4.9e-0666.67Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL
        +++CA+LV AA++SA +A +EGPAAAP  APGPSS A+AALPAVG+ +GAS+LSF AYYL
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL

A0A5D3DQ83 Arabinogalactan peptide 231.6e-0981.67Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL
        +VTCAVLVAAAAVSATMA SEGPA AP+     SSDA AALPAVGAFIGASL+SFFAYYL
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL

A0A7N0T679 Uncharacterized protein1.2e-0458.33Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL
        +V CA LVAAA+++A +AV      APAAAPGPSSDA+AA+PA+G+ +GA++ SFFA+Y+
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL

V7AHI5 Uncharacterized protein7.0e-0562.71Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYY
        +VTCA+L+AAA+VSATMA +E     PA APGPSS A+AA P VG+ +GAS+LSFFA +
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYY

SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 232.0e-0453.33Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL
        ++ C VL AAA+++A MA  E      A APGP+S A+AALPA+G+ +GASL+S F+YYL
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL

Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)1.0e-0349.18Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGP-SSDAAAALPAVGAFIGASLLSFFAYYL
        ++ C V+ AAA+++A MA   G     A APGP +S A+ A+PA+G+ +GASL+S FAYYL
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGP-SSDAAAALPAVGAFIGASLLSFFAYYL

AT3G57690.1 arabinogalactan protein 231.4e-0553.33Show/hide
Query:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL
        ++ C VL AAA+++A MA  E      A APGP+S A+AALPA+G+ +GASL+S F+YYL
Subjt:  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGGTGACCTGTGCCGTCCTTGTTGCCGCTGCCGCCGTGAGTGCTACTATGGCTGTCAGTGAAGGGCCAGCTGCCGCGCCAGCTGCCGCACCTGGCCCATCCTCCGATGC
AGCTGCTGCTTTGCCAGCTGTTGGAGCCTTCATTGGTGCTTCTCTCCTATCTTTCTTTGCCTACTACTTG
mRNA sequenceShow/hide mRNA sequence
CAGGTGACCTGTGCCGTCCTTGTTGCCGCTGCCGCCGTGAGTGCTACTATGGCTGTCAGTGAAGGGCCAGCTGCCGCGCCAGCTGCCGCACCTGGCCCATCCTCCGATGC
AGCTGCTGCTTTGCCAGCTGTTGGAGCCTTCATTGGTGCTTCTCTCCTATCTTTCTTTGCCTACTACTTG
Protein sequenceShow/hide protein sequence
QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL