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CSPI03G37800 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G37800
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSigma factor binding protein 2
Genome locationChr3:32722918..32723710
RNA-Seq ExpressionCSPI03G37800
SyntenyCSPI03G37800
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651179.1 hypothetical protein Csa_002123, partial [Cucumis sativus]1.8e-4598.02Show/hide
Query:  MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVV-AEGEEDEQELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNP
        MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVV AEGEEDEQELLIDSSCDDDFLRSSYESLEDILRRDVME+FGAISTSLFNP
Subjt:  MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVV-AEGEEDEQELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNP

Query:  L
        L
Subjt:  L

XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]3.5e-5787.5Show/hide
Query:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVA-EGEEDEQ
        MDR+LLVSELTTT  K KKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEI+  +D+EKKVVA +GE+DEQ
Subjt:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVA-EGEEDEQ

Query:  ELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNPLV
        ELLIDSSCDDDF RSS+ESLEDILRRDVME+FGAISTSL NPLV
Subjt:  ELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNPLV

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]4.5e-6897.92Show/hide
Query:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVV-AEGEEDEQ
        MDRSLLVSELTTTMKKN KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVV AEGEEDEQ
Subjt:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVV-AEGEEDEQ

Query:  ELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNPLV
        ELLIDSSCDDDFLRSSYESLEDILRRDVME+FGAISTSLFNPLV
Subjt:  ELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNPLV

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]1.0e-2455.94Show/hide
Query:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAEGEEDEQE
        MDR+L+VSE    M+  KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK    EG++DE+ 
Subjt:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAEGEEDEQE

Query:  LL----IDSSCDDDFLRSSYESLEDILRRD-VMESFGAISTSL
         L         +DDFL S YES E++L R+ +ME+F   S S+
Subjt:  LL----IDSSCDDDFLRSSYESLEDILRRD-VMESFGAISTSL

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]8.8e-1648.39Show/hide
Query:  KKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAEGEEDEQELLI--------DSSCDD
        K+  RKRK C+   QPLKVVYISNPMRV  SA+EFR LVQ+LTG+DA      KF P++S E    +   +K+  + ++D+Q+LL+        DSS  D
Subjt:  KKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAEGEEDEQELLI--------DSSCDD

Query:  DFLRSSYESLEDILRRDVMESFGA
        DFL  SYESLE I  RD+++   A
Subjt:  DFLRSSYESLEDILRRDVMESFGA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein2.2e-6897.92Show/hide
Query:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVV-AEGEEDEQ
        MDRSLLVSELTTTMKKN KTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVV AEGEEDEQ
Subjt:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVV-AEGEEDEQ

Query:  ELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNPLV
        ELLIDSSCDDDFLRSSYESLEDILRRDVME+FGAISTSLFNPLV
Subjt:  ELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNPLV

A0A1S3B8H6 uncharacterized protein LOC1034871671.7e-5787.5Show/hide
Query:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVA-EGEEDEQ
        MDR+LLVSELTTT  K KKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEI+  +D+EKKVVA +GE+DEQ
Subjt:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVA-EGEEDEQ

Query:  ELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNPLV
        ELLIDSSCDDDF RSS+ESLEDILRRDVME+FGAISTSL NPLV
Subjt:  ELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNPLV

A0A5D3DPQ4 Sigma factor binding protein 21.7e-5787.5Show/hide
Query:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVA-EGEEDEQ
        MDR+LLVSELTTT  K KKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEI+  +D+EKKVVA +GE+DEQ
Subjt:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVA-EGEEDEQ

Query:  ELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNPLV
        ELLIDSSCDDDF RSS+ESLEDILRRDVME+FGAISTSL NPLV
Subjt:  ELLIDSSCDDDFLRSSYESLEDILRRDVMESFGAISTSLFNPLV

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like5.0e-2555.94Show/hide
Query:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAEGEEDEQE
        MDR+L+VSE    M+  KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK    EG++DE+ 
Subjt:  MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAEGEEDEQE

Query:  LL----IDSSCDDDFLRSSYESLEDILRRD-VMESFGAISTSL
         L         +DDFL S YES E++L R+ +ME+F   S S+
Subjt:  LL----IDSSCDDDFLRSSYESLEDILRRD-VMESFGAISTSL

A0A6J1FKR4 uncharacterized protein LOC1114466398.0e-1545.38Show/hide
Query:  KKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAEGEEDEQELLIDSSCDDD---FLRS
        K+  R RK C+   QPLKVVYISNPMRV  SA+EFR LVQELTG+DA      KF P++S   +   +   + + + ++DEQ LL  ++ +D    FL  
Subjt:  KKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAEGEEDEQELLIDSSCDDD---FLRS

Query:  SYESLEDILRRDVMESFGA
        SYES E I  RD+++   A
Subjt:  SYESLEDILRRDVMESFGA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic2.3e-0642.86Show/hide
Query:  MDRS---LLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF
        MD+S   LL+++  ++    +   ++++      +P+KV YISNPMRV T  S+FR LVQELTG+DA    P PT F
Subjt:  MDRS---LLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF

Q9LDH1 Sigma factor binding protein 1, chloroplastic2.4e-0850.68Show/hide
Query:  TTTMKKNKKTTRKRKSCEENK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASS
        TT++ K K +   RKS ++ K      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  SS
Subjt:  TTTMKKNKKTTRKRKSCEENK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASS

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.6e-0742.86Show/hide
Query:  MDRS---LLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF
        MD+S   LL+++  ++    +   ++++      +P+KV YISNPMRV T  S+FR LVQELTG+DA    P PT F
Subjt:  MDRS---LLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF

AT3G56710.1 sigma factor binding protein 11.7e-0950.68Show/hide
Query:  TTTMKKNKKTTRKRKSCEENK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASS
        TT++ K K +   RKS ++ K      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  SS
Subjt:  TTTMKKNKKTTRKRKSCEENK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGAAGTTTACTAGTAAGTGAGCTAACGACGACGATGAAGAAGAACAAGAAAACAACACGAAAAAGGAAATCATGTGAAGAAAATAAGCAACCGCTTAAAGTTGT
ATACATATCGAACCCGATGAGGGTTCACACAAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGACGAGATGCGGAGTTTCCTGACCCGACTAAGTTCTATC
CAGCGTCGTCGTGCGAGATCATGAATGATGATGATGTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAGGATGAGCAAGAACTGTTGATTGATTCAAGCTGTGATGATGAT
TTCTTAAGGAGTTCATATGAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAGCTTTGGAGCCATCTCTACATCTTTATTCAATCCTTTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
TTTTATTCCTAAGTTTAGAACGTAACTAAAAATAAATAAAAAGATAAGACGGTAACTTTTGAAATAATAGAGTATCAACGTACATAAATCAAACTTTTTTTTTCCTCCTG
TCATTCCAAGAAGCCTCCTACTTATGATTTTGCAGCCACCAAACACTTTTCTTTCTCCCATAAATTAAACCCTCAAAAACTGCCTCTTCACGAACACGAACTCGAAATAA
TGGATCGAAGTTTACTAGTAAGTGAGCTAACGACGACGATGAAGAAGAACAAGAAAACAACACGAAAAAGGAAATCATGTGAAGAAAATAAGCAACCGCTTAAAGTTGTA
TACATATCGAACCCGATGAGGGTTCACACAAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGACGAGATGCGGAGTTTCCTGACCCGACTAAGTTCTATCC
AGCGTCGTCGTGCGAGATCATGAATGATGATGATGTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAGGATGAGCAAGAACTGTTGATTGATTCAAGCTGTGATGATGATT
TCTTAAGGAGTTCATATGAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAGCTTTGGAGCCATCTCTACATCTTTATTCAATCCTTTGGTTTAGTATAATGAT
TGAGGTTTTCATCTTTATTCTCTCAGCTTTCATTATAATTTAGCTATATATTTCAAGAGCCTGTCCAAAAATAAATGAAATGCACAATATTGTAATGTGTATCTTTAATT
TACTCACTCTATCATAATCCATC
Protein sequenceShow/hide protein sequence
MDRSLLVSELTTTMKKNKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAEGEEDEQELLIDSSCDDD
FLRSSYESLEDILRRDVMESFGAISTSLFNPLV