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CSPI03G38330 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G38330
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptiontRNA-splicing endonuclease subunit Sen54
Genome locationChr3:33146011..33146590
RNA-Seq ExpressionCSPI03G38330
SyntenyCSPI03G38330
Gene Ontology termsGO:0000379 - tRNA-type intron splice site recognition and cleavage (biological process)
GO:0006913 - nucleocytoplasmic transport (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000214 - tRNA-intron endonuclease complex (cellular component)
GO:0005643 - nuclear pore (cellular component)
GO:0004519 - endonuclease activity (molecular function)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028441.1 tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma]8.0e-2081.25Show/hide
Query:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK
        MEATDWE SSGGAS DDDN+EQDIK+EEE L +SG +RKLQFRKHAST RWND MGMAEV+ENK
Subjt:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK

KGN59498.1 hypothetical protein Csa_002665 [Cucumis sativus]3.6e-28100Show/hide
Query:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENKSR
        MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENKSR
Subjt:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENKSR

XP_011653726.1 uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus]8.0e-2083.33Show/hide
Query:  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK
        MEAT+WESSSGGAS  GD+DNYEQDI DEEE L ASG LRKLQFRKHAST RWND+MGMAEV+ENK
Subjt:  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK

XP_022156818.1 uncharacterized protein LOC111023660 [Momordica charantia]2.7e-2081.25Show/hide
Query:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK
        MEATDWESSSGGASGDD+ YEQD++DEEE L ASG +RKLQFRKHAST RWND+MGMAEV+EN+
Subjt:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK

XP_038883355.1 uncharacterized protein LOC120074337 [Benincasa hispida]6.5e-2285.94Show/hide
Query:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK
        MEA DWESSSGGASGD+DNYE+DI +EEE L ASGYLRKLQFRKHAST RWNDRMGMAEV+ENK
Subjt:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK

TrEMBL top hitse value%identityAlignment
A0A0A0KXV5 tRNA_int_end_N2 domain-containing protein3.9e-2083.33Show/hide
Query:  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK
        MEAT+WESSSGGAS  GD+DNYEQDI DEEE L ASG LRKLQFRKHAST RWND+MGMAEV+ENK
Subjt:  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK

A0A0A0LCN1 Uncharacterized protein1.7e-28100Show/hide
Query:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENKSR
        MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENKSR
Subjt:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENKSR

A0A6J1DRN3 uncharacterized protein LOC1110236601.3e-2081.25Show/hide
Query:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK
        MEATDWESSSGGASGDD+ YEQD++DEEE L ASG +RKLQFRKHAST RWND+MGMAEV+EN+
Subjt:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK

A0A6J1FKK4 tRNA-splicing endonuclease subunit Sen543.9e-2081.25Show/hide
Query:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK
        MEATDWE SSGGAS DDDN+EQDIK+EEE L +SG +RKLQFRKHAST RWND MGMAEV+ENK
Subjt:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK

A0A6J1I8D9 tRNA-splicing endonuclease subunit Sen54 isoform X35.0e-2081.25Show/hide
Query:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK
        MEATDWE SSGGAS DDDN+EQDIK+EEE L +SG +RKLQFRKHAST RWND MGMAEV+ENK
Subjt:  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTACAGATTGGGAAAGCTCATCAGGAGGAGCTAGTGGTGATGACGACAATTACGAGCAAGACATAAAAGATGAAGAAGAACGTCTCTTCGCATCTGGATACTT
GCGCAAGCTGCAGTTTAGGAAGCATGCTTCAACTGTTCGATGGAATGATCGAATGGGAATGGCAGAAGTTGTAGAGAACAAGAGCAGATAG
mRNA sequenceShow/hide mRNA sequence
CTTATTAGTTTTGGATCGTTATTTCTTCATGTTTTACACAGTTCAGTCCCGTTGAACAAGGAGTTTTGATATTTGATTCGGAGGTATCTGATGGAGGCTACAGATTGGGA
AAGCTCATCAGGAGGAGCTAGTGGTGATGACGACAATTACGAGCAAGACATAAAAGATGAAGAAGAACGTCTCTTCGCATCTGGATACTTGCGCAAGCTGCAGTTTAGGA
AGCATGCTTCAACTGTTCGATGGAATGATCGAATGGGAATGGCAGAAGTTGTAGAGAACAAGAGCAGATAGACGGCTTTGATAGACGGATGATTCTACCAATCCGGCTTT
GATAGACGGGTTAAAATCTCCTGCCAAGCACCATCAAGAACCAAATAAGCCAAAGACCCAACTCTTCCTTAAACTTCTTCCCTGTTCATTTGCAAGGCCATTCACTCCCA
ATGATCTGTATTCCTCAATCTGTCCAAAGAAAAGCAAG
Protein sequenceShow/hide protein sequence
MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENKSR