CuGenDBv2

Gene ID	CSPI03G40190
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	zinc finger CCCH domain-containing protein 41
Genome location	Chr3:34429027..34430172
RNA-Seq Expression	CSPI03G40190
Synteny	CSPI03G40190
Gene Ontology terms	GO:0003723 - RNA binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily IPR045137 - RNA-binding protein 26/27

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0053642.1 zinc finger CCCH domain-containing protein 41 isoform X1 [Cucumis melo var. makuwa]

8.0e-56

90.08

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Query:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET
        EDVIKQHFS+LGDVC+VE VSEDGV+ISNASNNCSANVTFLTRHSAERAF DGRSWQGQDLKFIWLS+DKDPH TSSDTSRDADMEPEN EAE ISLNET
Subjt:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET

Query:  LSHKESQSPTRDDSDEPSETGKVSAVIERET
          HKESQSPT+DDSDEP ETGKVSAVIERET
Subjt:  LSHKESQSPTRDDSDEPSETGKVSAVIERET

KAE8651261.1 hypothetical protein Csa_001929 [Cucumis sativus]

3.5e-59

100

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Query:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET
        EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET
Subjt:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET

Query:  LSHKESQSPTRDDSDEPSET
        LSHKESQSPTRDDSDEPSET
Subjt:  LSHKESQSPTRDDSDEPSET

TYK00812.1 zinc finger CCCH domain-containing protein 41 isoform X1 [Cucumis melo var. makuwa]

8.0e-56

90.08

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Query:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET
        EDVIKQHFS+LGDVC+VE VSEDGV+ISNASNNCSANVTFLTRHSAERAF DGRSWQGQDLKFIWLS+DKDPH TSSDTSRDADMEPEN EAE ISLNET
Subjt:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET

Query:  LSHKESQSPTRDDSDEPSETGKVSAVIERET
          HKESQSPT+DDSDEP ETGKVSAVIERET
Subjt:  LSHKESQSPTRDDSDEPSETGKVSAVIERET

XP_004141194.1 zinc finger CCCH domain-containing protein 41 [Cucumis sativus]

4.3e-65

100

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Query:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET
        EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET
Subjt:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET

Query:  LSHKESQSPTRDDSDEPSETGKVSAVIERET
        LSHKESQSPTRDDSDEPSETGKVSAVIERET
Subjt:  LSHKESQSPTRDDSDEPSETGKVSAVIERET

XP_008443556.1 PREDICTED: zinc finger CCCH domain-containing protein 41 isoform X1 [Cucumis melo]

8.0e-56

90.08

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Query:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET
        EDVIKQHFS+LGDVC+VE VSEDGV+ISNASNNCSANVTFLTRHSAERAF DGRSWQGQDLKFIWLS+DKDPH TSSDTSRDADMEPEN EAE ISLNET
Subjt:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET

Query:  LSHKESQSPTRDDSDEPSETGKVSAVIERET
          HKESQSPT+DDSDEP ETGKVSAVIERET
Subjt:  LSHKESQSPTRDDSDEPSETGKVSAVIERET

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LG72 RRM domain-containing protein

5.4e-66

100

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Query:  MEDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNE
        MEDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNE
Subjt:  MEDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNE

Query:  TLSHKESQSPTRDDSDEPSETGKVSAVIERET
        TLSHKESQSPTRDDSDEPSETGKVSAVIERET
Subjt:  TLSHKESQSPTRDDSDEPSETGKVSAVIERET

A0A1S3B8B1 zinc finger CCCH domain-containing protein 41 isoform X1

3.9e-56

90.08

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Query:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET
        EDVIKQHFS+LGDVC+VE VSEDGV+ISNASNNCSANVTFLTRHSAERAF DGRSWQGQDLKFIWLS+DKDPH TSSDTSRDADMEPEN EAE ISLNET
Subjt:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET

Query:  LSHKESQSPTRDDSDEPSETGKVSAVIERET
          HKESQSPT+DDSDEP ETGKVSAVIERET
Subjt:  LSHKESQSPTRDDSDEPSETGKVSAVIERET

A0A5A7UCY7 Zinc finger CCCH domain-containing protein 41 isoform X1

3.9e-56

90.08

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Query:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET
        EDVIKQHFS+LGDVC+VE VSEDGV+ISNASNNCSANVTFLTRHSAERAF DGRSWQGQDLKFIWLS+DKDPH TSSDTSRDADMEPEN EAE ISLNET
Subjt:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET

Query:  LSHKESQSPTRDDSDEPSETGKVSAVIERET
          HKESQSPT+DDSDEP ETGKVSAVIERET
Subjt:  LSHKESQSPTRDDSDEPSETGKVSAVIERET

A0A5D3BPX2 Zinc finger CCCH domain-containing protein 41 isoform X1

3.9e-56

90.08

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Query:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET
        EDVIKQHFS+LGDVC+VE VSEDGV+ISNASNNCSANVTFLTRHSAERAF DGRSWQGQDLKFIWLS+DKDPH TSSDTSRDADMEPEN EAE ISLNET
Subjt:  EDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNET

Query:  LSHKESQSPTRDDSDEPSETGKVSAVIERET
          HKESQSPT+DDSDEP ETGKVSAVIERET
Subjt:  LSHKESQSPTRDDSDEPSETGKVSAVIERET

A0A6J1DF65 zinc finger CCCH domain-containing protein 41

2.1e-38

69.7

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Query:  DVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSND-KDPHHTSSDTSRDADMEPENEEAETISLNET
        DV+K+HFSS GDVC+VE VSED  ++SNASNNCSANVTFLTRHSAERAFEDG+ WQGQDLKFIWLS+  K+P   S + SRDADMEPE+ EAE+I   ET
Subjt:  DVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSND-KDPHHTSSDTSRDADMEPENEEAETISLNET

Query:  -LSHKESQSPTRDDSDEPSETGKVSAVIERET
            +ES++ TRD+  EPSETGKVS VIE ET
Subjt:  -LSHKESQSPTRDDSDEPSETGKVSAVIERET

SwissProt top hits

e value

%identity

Alignment

Q0JDM0 Zinc finger CCCH domain-containing protein 27

1.8e-05

30.88

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Query:  EDVIKQHFSSLGDVCSVEFVSEDGVQISN-----ASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETI
        E V+K HF S G++ SV  V ED    ++      S +CSA VT+ TR SAE+AF  G+S +G  L+F+WL+        S  ++  +  +  +  A   
Subjt:  EDVIKQHFSSLGDVCSVEFVSEDGVQISN-----ASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETI

Query:  SLNETLSHKESQSPTRDDSDEPSETGKVSAVIERET
        S +    +  S+S T          GK+S+ ++  T
Subjt:  SLNETLSHKESQSPTRDDSDEPSETGKVSAVIERET

Q9LVX1 Zinc finger CCCH domain-containing protein 41

8.8e-05

27.61

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Query:  VIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSAN------VTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETIS
        V+K+HFSS G+V  VE   ED   I +  ++ + N      VTF+ R +AE+AF + + WQ   L+ +W++           ++R+++    N  + ++S
Subjt:  VIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSAN------VTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETIS

Query:  LNETLSHKESQSPTRDDSDEPSETGKVSAVIERE
         +   S  +  S + D   +P+   K S+  E E
Subjt:  LNETLSHKESQSPTRDDSDEPSETGKVSAVIERE

Arabidopsis top hits

e value

%identity

Alignment

AT3G27700.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

6.2e-06

27.61

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Query:  VIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSAN------VTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETIS
        V+K+HFSS G+V  VE   ED   I +  ++ + N      VTF+ R +AE+AF + + WQ   L+ +W++           ++R+++    N  + ++S
Subjt:  VIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSAN------VTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETIS

Query:  LNETLSHKESQSPTRDDSDEPSETGKVSAVIERE
         +   S  +  S + D   +P+   K S+  E E
Subjt:  LNETLSHKESQSPTRDDSDEPSETGKVSAVIERE

AT3G27700.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

6.2e-06

27.61

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Query:  VIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSAN------VTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETIS
        V+K+HFSS G+V  VE   ED   I +  ++ + N      VTF+ R +AE+AF + + WQ   L+ +W++           ++R+++    N  + ++S
Subjt:  VIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSAN------VTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETIS

Query:  LNETLSHKESQSPTRDDSDEPSETGKVSAVIERE
         +   S  +  S + D   +P+   K S+  E E
Subjt:  LNETLSHKESQSPTRDDSDEPSETGKVSAVIERE

Sequences

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CDS sequence

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ATGGAGGATGTAATAAAGCAACATTTCTCGTCGTTGGGCGATGTTTGTTCTGTGGAGTTTGTTTCTGAAGATGGTGTTCAGATTTCAAATGCATCCAATAACTGCTCAGC
TAATGTCACTTTTTTAACCCGTCATTCAGCTGAAAGGGCATTTGAAGACGGCAGATCCTGGCAAGGTCAAGACTTAAAGTTTATATGGCTGTCTAATGACAAAGACCCTC
ATCACACTTCTTCGGACACATCTCGAGATGCAGACATGGAGCCTGAAAATGAAGAAGCAGAAACCATTTCTTTAAACGAAACCCTATCTCACAAAGAATCCCAAAGTCCA
ACACGAGATGACAGTGACGAGCCTTCGGAAACAGGTAAAGTTTCGGCAGTGATAGAAAGAGAGACATGA

mRNA sequence

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Protein sequence

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MEDVIKQHFSSLGDVCSVEFVSEDGVQISNASNNCSANVTFLTRHSAERAFEDGRSWQGQDLKFIWLSNDKDPHHTSSDTSRDADMEPENEEAETISLNETLSHKESQSP
TRDDSDEPSETGKVSAVIERET

CSPI03G40190 (gene) of Cucumber (PI 183967) v1 genome