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CSPI03G40510 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G40510
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiondouble-stranded RNA-binding protein 1 isoform X2
Genome locationChr3:34698372..34699409
RNA-Seq ExpressionCSPI03G40510
SyntenyCSPI03G40510
Gene Ontology termsGO:0003725 - double-stranded RNA binding (molecular function)
InterPro domainsIPR014720 - Double-stranded RNA-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057205.1 double-stranded RNA-binding protein 1 isoform X2 [Cucumis melo var. makuwa]4.3e-5393.39Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
        MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCS TPSKSSKQAQNDAAKLAFDFFSLPSLPQP +QLCPQP+LP+SSSPPKLIPSI 
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP

Query:  PF-PPSLNLSSFPQPSLPSQL
        PF PPSL+LSSFPQPSLPSQL
Subjt:  PF-PPSLNLSSFPQPSLPSQL

XP_004141127.1 double-stranded RNA-binding protein 1 [Cucumis sativus]3.4e-5899.17Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
        MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP

Query:  PFPPSLNLSSFPQPSLPSQL
        PFPPSLNLSSFPQPSL SQL
Subjt:  PFPPSLNLSSFPQPSLPSQL

XP_008464954.1 PREDICTED: double-stranded RNA-binding protein 1 isoform X1 [Cucumis melo]4.3e-5393.39Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
        MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCS TPSKSSKQAQNDAAKLAFDFFSLPSLPQP +QLCPQP+LP+SSSPPKLIPSI 
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP

Query:  PF-PPSLNLSSFPQPSLPSQL
        PF PPSL+LSSFPQPSLPSQL
Subjt:  PF-PPSLNLSSFPQPSLPSQL

XP_008464955.1 PREDICTED: double-stranded RNA-binding protein 1 isoform X2 [Cucumis melo]4.3e-5393.39Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
        MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCS TPSKSSKQAQNDAAKLAFDFFSLPSLPQP +QLCPQP+LP+SSSPPKLIPSI 
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP

Query:  PF-PPSLNLSSFPQPSLPSQL
        PF PPSL+LSSFPQPSLPSQL
Subjt:  PF-PPSLNLSSFPQPSLPSQL

XP_038904852.1 double-stranded RNA-binding protein 1-like isoform X1 [Benincasa hispida]8.1e-4477.95Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQP---PEQLCPQPLLPQSSSPPKLIP
        MFKT+LQELCHRKSY+LPEYSVVKQGQDHDPRFEATVTVDGKQF S  P KSSKQAQN+AAK+AFDFFSLPS PQP   P+  CPQPLLP+SS PPKLIP
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQP---PEQLCPQPLLPQSSSPPKLIP

Query:  SIPPFP-PSLNLSSFPQPSLPSQLAKV
         IPPF   SL++SSFPQP+LPS L  +
Subjt:  SIPPFP-PSLNLSSFPQPSLPSQLAKV

TrEMBL top hitse value%identityAlignment
A0A0A0LI49 DRBM domain-containing protein7.3e-7598.68Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
        MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP

Query:  PFPPSLNLSSFPQPSLPSQLAKVQKRLSSLIYRRTALIKFAIGSLSPGMLD
        PFPPSLNLSSFPQPSL SQLAKVQKRLSSLIY RTALIKFAIGSLSPGMLD
Subjt:  PFPPSLNLSSFPQPSLPSQLAKVQKRLSSLIYRRTALIKFAIGSLSPGMLD

A0A1S3CMN7 double-stranded RNA-binding protein 1 isoform X22.1e-5393.39Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
        MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCS TPSKSSKQAQNDAAKLAFDFFSLPSLPQP +QLCPQP+LP+SSSPPKLIPSI 
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP

Query:  PF-PPSLNLSSFPQPSLPSQL
        PF PPSL+LSSFPQPSLPSQL
Subjt:  PF-PPSLNLSSFPQPSLPSQL

A0A1S3CMT3 double-stranded RNA-binding protein 1 isoform X12.1e-5393.39Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
        MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCS TPSKSSKQAQNDAAKLAFDFFSLPSLPQP +QLCPQP+LP+SSSPPKLIPSI 
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP

Query:  PF-PPSLNLSSFPQPSLPSQL
        PF PPSL+LSSFPQPSLPSQL
Subjt:  PF-PPSLNLSSFPQPSLPSQL

A0A5A7UUH6 Double-stranded RNA-binding protein 1 isoform X22.1e-5393.39Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
        MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCS TPSKSSKQAQNDAAKLAFDFFSLPSLPQP +QLCPQP+LP+SSSPPKLIPSI 
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP

Query:  PF-PPSLNLSSFPQPSLPSQL
        PF PPSL+LSSFPQPSLPSQL
Subjt:  PF-PPSLNLSSFPQPSLPSQL

A0A6J1EVN0 double-stranded RNA-binding protein 1-like3.0e-3675Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP
        MFKTKLQELCHRKSY+LP YSVVKQGQDHDPRFEATVTV G +FCS TP KSSKQAQNDAAKLAFDFFSLPS P+  E   PQP  P+SS P + +   P
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIP

Query:  PFP-PSLNLSSFPQPSLPSQ
         F  PSL++SSFPQPSLPSQ
Subjt:  PFP-PSLNLSSFPQPSLPSQ

SwissProt top hitse value%identityAlignment
B7E321 Double-stranded RNA-binding protein 55.1e-0942.86Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSL
        M+K +LQEL  R  + LP Y   ++G DH PRF+ATVT +G+ F  P+   + +QA++ AA++A    SL
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSL

Q5N8Z0 Double-stranded RNA-binding protein 11.1e-0844.79Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSP-TPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKL
        M+K++LQELC ++ +  PEY+    G  H P F ATV+V+G +F +P   ++S+K+A N AAK AFD  S  SLP PP    P P   QSS   +L
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSP-TPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKL

Q8GY79 Double-stranded RNA-binding protein 55.1e-0940.58Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+ +++G DH PRF+A+V  +G+ F SPT   + +QA++ AA+++ +  S
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS

Q9LJF5 Double-stranded RNA-binding protein 35.1e-0942.03Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+  ++G DH PRF+A+V  +G+ F SPT   + +QA++ AA++A    S
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS

Q9SKN2 Double-stranded RNA-binding protein 23.0e-0942.03Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+ +++G DH PRF+ATV  +G+ F SP    + +QA++ AA++A +  S
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS

Arabidopsis top hitse value%identityAlignment
AT2G28380.1 dsRNA-binding protein 22.1e-1042.03Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+ +++G DH PRF+ATV  +G+ F SP    + +QA++ AA++A +  S
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS

AT3G26932.1 dsRNA-binding protein 33.6e-1042.03Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+  ++G DH PRF+A+V  +G+ F SPT   + +QA++ AA++A    S
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS

AT3G26932.2 dsRNA-binding protein 33.6e-1042.03Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+  ++G DH PRF+A+V  +G+ F SPT   + +QA++ AA++A    S
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS

AT5G41070.1 dsRNA-binding protein 53.6e-1040.58Show/hide
Query:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS
        M+K +LQEL  R  + LP Y+ +++G DH PRF+A+V  +G+ F SPT   + +QA++ AA+++ +  S
Subjt:  MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAAACAAAGCTTCAAGAACTCTGTCATCGCAAATCTTACAAATTACCTGAATATTCAGTGGTTAAACAAGGCCAAGACCACGACCCACGTTTTGAAGCCACTGT
CACTGTCGACGGCAAGCAATTCTGTTCACCCACTCCTTCTAAATCTTCCAAGCAAGCACAGAACGATGCTGCTAAGCTTGCTTTTGACTTCTTTTCTCTTCCTTCTTTAC
CTCAACCGCCGGAGCAGCTTTGCCCTCAACCACTTTTGCCACAATCCTCTTCTCCCCCGAAACTAATTCCTTCTATTCCCCCATTTCCTCCCTCTCTAAATTTATCTTCT
TTTCCTCAGCCGTCTTTGCCTTCGCAATTGGCGAAAGTACAAAAACGTCTCTCCAGCCTAATATACAGAAGGACAGCTTTGATAAAATTTGCCATAGGGTCTTTGTCTCC
AGGGATGCTTGATTGA
mRNA sequenceShow/hide mRNA sequence
TTTTATTACAGGAGCAATGTTGGATTTGGGGGAGCCAGGTGGAGCAAGAACTGAAACGCTTCCCTTCTCCACCGTTACCACTCTTCTTCTCAACTTCTAGGGTTCTTCCT
TTTCTCTCTCTATTTCACTCCATTTTCTCTACTCAAACCCCTTCCATTCATTCAACATGTTCAAAACAAAGCTTCAAGAACTCTGTCATCGCAAATCTTACAAATTACCT
GAATATTCAGTGGTTAAACAAGGCCAAGACCACGACCCACGTTTTGAAGCCACTGTCACTGTCGACGGCAAGCAATTCTGTTCACCCACTCCTTCTAAATCTTCCAAGCA
AGCACAGAACGATGCTGCTAAGCTTGCTTTTGACTTCTTTTCTCTTCCTTCTTTACCTCAACCGCCGGAGCAGCTTTGCCCTCAACCACTTTTGCCACAATCCTCTTCTC
CCCCGAAACTAATTCCTTCTATTCCCCCATTTCCTCCCTCTCTAAATTTATCTTCTTTTCCTCAGCCGTCTTTGCCTTCGCAATTGGCGAAAGTACAAAAACGTCTCTCC
AGCCTAATATACAGAAGGACAGCTTTGATAAAATTTGCCATAGGGTCTTTGTCTCCAGGGATGCTTGATTGA
Protein sequenceShow/hide protein sequence
MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAAKLAFDFFSLPSLPQPPEQLCPQPLLPQSSSPPKLIPSIPPFPPSLNLSS
FPQPSLPSQLAKVQKRLSSLIYRRTALIKFAIGSLSPGMLD