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CSPI03G40720 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G40720
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCDT1 domain-containing protein
Genome locationChr3:34861703..34862581
RNA-Seq ExpressionCSPI03G40720
SyntenyCSPI03G40720
Gene Ontology termsGO:0000076 - DNA replication checkpoint (biological process)
GO:0000278 - mitotic cell cycle (biological process)
GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process)
GO:0071163 - DNA replication preinitiation complex assembly (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0070182 - DNA polymerase binding (molecular function)
InterPro domainsIPR038090 - DNA replication factor Cdt1, C-terminal WH domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043447.1 CDT1-like protein b [Cucumis melo var. makuwa]7.1e-5264.39Show/hide
Query:  NIDAETS-DESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSS
        NID E+S   SST+P SPI                           PTT S  VGRV M  E  QSAKANDIDSTP   +STP +LM +TPAM PPK+SS
Subjt:  NIDAETS-DESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSS

Query:  MTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHK
        MTPDDD S+STNKLVRRPP SRS+VFDTPTK      E DVSL+DDILDV    LVQSI+EKER IKEEQMPAITQAKRRQKMIA LPKLFNAIFFLYHK
Subjt:  MTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHK

Query:  RTIIK
        RT+I+
Subjt:  RTIIK

XP_004151978.3 CDT1-like protein a, chloroplastic [Cucumis sativus]7.6e-6270.59Show/hide
Query:  NIDAETSDESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM
        NID +T D SSTKPSSPI                           PTT S MVG V MRKEDGQSAK NDIDSTP  FVST D+LM STPAMAPPK+SSM
Subjt:  NIDAETSDESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM

Query:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPT-----KGEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR
        TPDDDFSYSTNKLVRRPP SRS+VFDTPT     K EIDVSLD+DILDV    LVQSIREKER IKEEQMPAITQAKRRQK+IA LPKLFNAIFFLYHKR
Subjt:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPT-----KGEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR

Query:  TIIK
        T++K
Subjt:  TIIK

XP_008447443.1 PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo]1.8e-5869.12Show/hide
Query:  NIDAETSDESSTKPSS---------------------------PIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM
        N+DAETS  S+TKP S                           PIPTT S MVG V+MRKEDGQ AKANDIDSTP  FVSTPDRLM STPA++ PK+SSM
Subjt:  NIDAETSDESSTKPSS---------------------------PIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM

Query:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTKG-----EIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR
        TPDDDF+YSTNKLVRRPP SRS+VFDTPTK      + DVSLDDDILDV    LVQSIREKER IKE+QMPAITQAKRRQKMIA LPKLFNAIFFLYHKR
Subjt:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTKG-----EIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR

Query:  TIIK
        T+IK
Subjt:  TIIK

XP_031737520.1 CDT1-like protein a, chloroplastic [Cucumis sativus]7.6e-6270.59Show/hide
Query:  NIDAETSDESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM
        NID +T D SSTKPSSPI                           PTT S MVG V MRKEDGQSAK NDIDSTP  FVST D+LM STPAMAPPK+SSM
Subjt:  NIDAETSDESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM

Query:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPT-----KGEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR
        TPDDDFSYSTNKLVRRPP SRS+VFDTPT     K EIDVSLD+DILDV    LVQSIREKER IKEEQMPAITQAKRRQK+IA LPKLFNAIFFLYHKR
Subjt:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPT-----KGEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR

Query:  TIIK
        T++K
Subjt:  TIIK

XP_038887484.1 CDT1-like protein b [Benincasa hispida]2.8e-5667.65Show/hide
Query:  NIDAETSDE-SSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSS
        +ID E+ D  SSTKPSSP+                           PTT S MVGRV M KED QSAK +DIDSTP   VSTP RLM STPAMAPPK+SS
Subjt:  NIDAETSDE-SSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSS

Query:  MTPDDDFSYSTNKLVRRPPCSRSIVFDTPT-----KGEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHK
        MTPDDD S+STNKLVRRPP SRS+VFDTPT     K E DVSLDDDILDV    LVQSIREKER IKEEQMPAITQAKRRQKMIA LPKLFNAIFFL+HK
Subjt:  MTPDDDFSYSTNKLVRRPPCSRSIVFDTPT-----KGEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHK

Query:  RTII
        RT+I
Subjt:  RTII

TrEMBL top hitse value%identityAlignment
A0A0A0L7I7 CDT1 domain-containing protein3.7e-6270.59Show/hide
Query:  NIDAETSDESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM
        NID +T D SSTKPSSPI                           PTT S MVG V MRKEDGQSAK NDIDSTP  FVST D+LM STPAMAPPK+SSM
Subjt:  NIDAETSDESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM

Query:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPT-----KGEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR
        TPDDDFSYSTNKLVRRPP SRS+VFDTPT     K EIDVSLD+DILDV    LVQSIREKER IKEEQMPAITQAKRRQK+IA LPKLFNAIFFLYHKR
Subjt:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPT-----KGEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR

Query:  TIIK
        T++K
Subjt:  TIIK

A0A1S3BGW9 CDT1-like protein a, chloroplastic8.5e-5969.12Show/hide
Query:  NIDAETSDESSTKPSS---------------------------PIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM
        N+DAETS  S+TKP S                           PIPTT S MVG V+MRKEDGQ AKANDIDSTP  FVSTPDRLM STPA++ PK+SSM
Subjt:  NIDAETSDESSTKPSS---------------------------PIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM

Query:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTKG-----EIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR
        TPDDDF+YSTNKLVRRPP SRS+VFDTPTK      + DVSLDDDILDV    LVQSIREKER IKE+QMPAITQAKRRQKMIA LPKLFNAIFFLYHKR
Subjt:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTKG-----EIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR

Query:  TIIK
        T+IK
Subjt:  TIIK

A0A5A7T8X4 CDT1-like protein a8.5e-5969.12Show/hide
Query:  NIDAETSDESSTKPSS---------------------------PIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM
        N+DAETS  S+TKP S                           PIPTT S MVG V+MRKEDGQ AKANDIDSTP  FVSTPDRLM STPA++ PK+SSM
Subjt:  NIDAETSDESSTKPSS---------------------------PIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSM

Query:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTKG-----EIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR
        TPDDDF+YSTNKLVRRPP SRS+VFDTPTK      + DVSLDDDILDV    LVQSIREKER IKE+QMPAITQAKRRQKMIA LPKLFNAIFFLYHKR
Subjt:  TPDDDFSYSTNKLVRRPPCSRSIVFDTPTKG-----EIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKR

Query:  TIIK
        T+IK
Subjt:  TIIK

A0A5A7TNU2 CDT1-like protein b3.5e-5264.39Show/hide
Query:  NIDAETS-DESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSS
        NID E+S   SST+P SPI                           PTT S  VGRV M  E  QSAKANDIDSTP   +STP +LM +TPAM PPK+SS
Subjt:  NIDAETS-DESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSS

Query:  MTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHK
        MTPDDD S+STNKLVRRPP SRS+VFDTPTK      E DVSL+DDILDV    LVQSI+EKER IKEEQMPAITQAKRRQKMIA LPKLFNAIFFLYHK
Subjt:  MTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHK

Query:  RTIIK
        RT+I+
Subjt:  RTIIK

A0A5D3DKW1 CDT1-like protein b4.5e-5263.9Show/hide
Query:  NIDAETS-DESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSS
        NID E+S   SST+P SPI                           PTT S  VGRV M  E  QSAKANDIDSTP   +STP +LM +TPAM PPK+SS
Subjt:  NIDAETS-DESSTKPSSPI---------------------------PTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSS

Query:  MTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHK
        MTPDDD S+STNKLVRRPP SRS+VFDTPTK      E DVSL+DDILDV    LVQSI+EKER +KEEQMPAITQAKRRQKMIA LPKLFNAIFFLYHK
Subjt:  MTPDDDFSYSTNKLVRRPPCSRSIVFDTPTK-----GEIDVSLDDDILDV---HLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHK

Query:  RTIIK
        RT+I+
Subjt:  RTIIK

SwissProt top hitse value%identityAlignment
Q9SJW9 CDT1-like protein a, chloroplastic1.2e-1244.85Show/hide
Query:  IDSTPTMFVSTPDRLMPSTPAMAPPKQSS--MTPDDDFSYSTNKLVRR---------PPCSRSIVF--DTPTK--GEIDVSLDDDILDV---HLVQSIRE
        I +TP  F STP RLM ++ A  P K+S+    PDD  +    KLVRR         P   R++ F  D P     E DVS DD+IL +    L  +I+E
Subjt:  IDSTPTMFVSTPDRLMPSTPAMAPPKQSS--MTPDDDFSYSTNKLVRR---------PPCSRSIVF--DTPTK--GEIDVSLDDDILDV---HLVQSIRE

Query:  KERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFL
        +ER   E+Q PAI+ AKRR+KMIA LPKLFN I +L
Subjt:  KERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFL

Arabidopsis top hitse value%identityAlignment
AT2G31270.1 homolog of yeast CDT1 A8.2e-1444.85Show/hide
Query:  IDSTPTMFVSTPDRLMPSTPAMAPPKQSS--MTPDDDFSYSTNKLVRR---------PPCSRSIVF--DTPTK--GEIDVSLDDDILDV---HLVQSIRE
        I +TP  F STP RLM ++ A  P K+S+    PDD  +    KLVRR         P   R++ F  D P     E DVS DD+IL +    L  +I+E
Subjt:  IDSTPTMFVSTPDRLMPSTPAMAPPKQSS--MTPDDDFSYSTNKLVRR---------PPCSRSIVF--DTPTK--GEIDVSLDDDILDV---HLVQSIRE

Query:  KERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFL
        +ER   E+Q PAI+ AKRR+KMIA LPKLFN I +L
Subjt:  KERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATATTGACGCTGAAACTTCTGATGAGTCTTCAACTAAACCTTCCTCCCCAATTCCCACAACTCGCAGTACTATGGTAGGAAGAGTAAACATGAGGAAAGAAGA
TGGTCAATCTGCGAAAGCTAATGATATTGATTCAACTCCTACAATGTTTGTTTCAACCCCGGATCGGCTGATGCCTAGCACACCTGCAATGGCTCCACCAAAACAAAGTT
CCATGACTCCAGATGATGATTTTTCCTACTCAACAAACAAATTAGTCAGACGTCCACCTTGTTCGAGATCAATTGTATTTGACACTCCCACAAAGGGCGAGATAGACGTT
TCACTCGACGATGACATTCTAGATGTTCACCTCGTGCAATCCATTAGAGAGAAAGAAAGACCGATCAAAGAAGAGCAAATGCCAGCAATAACACAAGCTAAGAGACGACA
GAAAATGATTGCTGAACTGCCAAAACTCTTCAATGCTATCTTCTTCTTGTACCACAAGCGTACAATTATTAAAGGGAGGAGCTATTAA
mRNA sequenceShow/hide mRNA sequence
AGAAAATCATGGTTTCCCAATGATTAAATCTACCATGACTGGTCATGGCCCAAATAAATAGAAGGAATTATTAGGGTCATCTCATTTTTCACCATATGTTAGCCAGCTTT
TGTCTCAAAAAGTTGTTGACAGAGAAATGGCAAATATTGACGCTGAAACTTCTGATGAGTCTTCAACTAAACCTTCCTCCCCAATTCCCACAACTCGCAGTACTATGGTA
GGAAGAGTAAACATGAGGAAAGAAGATGGTCAATCTGCGAAAGCTAATGATATTGATTCAACTCCTACAATGTTTGTTTCAACCCCGGATCGGCTGATGCCTAGCACACC
TGCAATGGCTCCACCAAAACAAAGTTCCATGACTCCAGATGATGATTTTTCCTACTCAACAAACAAATTAGTCAGACGTCCACCTTGTTCGAGATCAATTGTATTTGACA
CTCCCACAAAGGGCGAGATAGACGTTTCACTCGACGATGACATTCTAGATGTTCACCTCGTGCAATCCATTAGAGAGAAAGAAAGACCGATCAAAGAAGAGCAAATGCCA
GCAATAACACAAGCTAAGAGACGACAGAAAATGATTGCTGAACTGCCAAAACTCTTCAATGCTATCTTCTTCTTGTACCACAAGCGTACAATTATTAAAGGGAGGAGCTA
TTAA
Protein sequenceShow/hide protein sequence
MANIDAETSDESSTKPSSPIPTTRSTMVGRVNMRKEDGQSAKANDIDSTPTMFVSTPDRLMPSTPAMAPPKQSSMTPDDDFSYSTNKLVRRPPCSRSIVFDTPTKGEIDV
SLDDDILDVHLVQSIREKERPIKEEQMPAITQAKRRQKMIAELPKLFNAIFFLYHKRTIIKGRSY