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CSPI03G40850 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G40850
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionexopolygalacturonase-like
Genome locationChr3:34964289..34964584
RNA-Seq ExpressionCSPI03G40850
SyntenyCSPI03G40850
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651277.1 hypothetical protein Csa_001067, partial [Cucumis sativus]2.4e-3098.59Show/hide
Query:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIPN
        MGVIKHSNLLVTTFLMSLLPFTIES+SHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIPN
Subjt:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIPN

XP_031741749.1 exopolygalacturonase-like [Cucumis sativus]3.0e-2587.14Show/hide
Query:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP
        MGVIK+SNLLVTTFLMSLL FTIESRSH+ +IFPL KYGNIVSGADVT+ALK+AWNDACASV PSAVVIP
Subjt:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP

XP_031742281.1 exopolygalacturonase-like [Cucumis sativus]2.1e-2691.43Show/hide
Query:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP
        MGVIK+SNLLVTTFLMSLL F IESRSHV +IFPLRKYGNIVSGADVT+ALKDAWNDACASVRPSAVVIP
Subjt:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP

XP_031744645.1 LOW QUALITY PROTEIN: exopolygalacturonase [Cucumis sativus]1.2e-2486.96Show/hide
Query:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVI
        MG+IK+SNLL+TTFLMSLL FTIES+SHV +IFPLRKYGNIVSG DVT+ALKDAWNDACASVRPSAVVI
Subjt:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVI

XP_031745268.1 exopolygalacturonase-like [Cucumis sativus]6.8e-2584.51Show/hide
Query:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIPN
        MG+IK+SNL +TTFLMSLL FTIES+SHV +IFPLRKYGNIVSG DVT+ALKDAWNDACASVRPSAVVIP+
Subjt:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIPN

TrEMBL top hitse value%identityAlignment
A0A0A0K3B7 Uncharacterized protein1.5e-2287.14Show/hide
Query:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP
        MGVIKH  LLVTTFLMSLL FTIE+RSHV  IF LRKYGNIVSGADVT+ALKDAWNDACAS RPSAVVIP
Subjt:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP

A0A1S3C2F4 exopolygalacturonase-like1.4e-2382.86Show/hide
Query:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP
        M VIK+S+LLV TFLM+LL FT+ESRSHV +IF LRKYGNIVSGADVT+ALKDAWNDACAS+RPSAVVIP
Subjt:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP

A0A5A7UY44 Exopolygalacturonase-like1.4e-2382.86Show/hide
Query:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP
        M VIK+S+LLV TFLM+LL FT+ESRSHV +IF LRKYGNIVSGADVT+ALKDAWNDACAS+RPSAVVIP
Subjt:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP

A0A5A7V045 Exopolygalacturonase-like1.5e-2281.43Show/hide
Query:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP
        MGVIK+S+LLVTTFLM+LL FTIE+RS+V +IF LRKY NIVSGADVT+ LKDAWNDACAS+RPSAVVIP
Subjt:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP

A0A5D3DD75 Exopolygalacturonase-like1.4e-2382.86Show/hide
Query:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP
        M VIK+S+LLV TFLM+LL FT+ESRSHV +IF LRKYGNIVSGADVT+ALKDAWNDACAS+RPSAVVIP
Subjt:  MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIP

SwissProt top hitse value%identityAlignment
Q39766 Polygalacturonase9.0e-0439.39Show/hide
Query:  HSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSG-ADVTKALKDAWNDACASVRPSAVVIP
        H N++ + F++ LL F   S+        + K+G    G  D++K   DAW +ACASV PS VVIP
Subjt:  HSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSG-ADVTKALKDAWNDACASVRPSAVVIP

Q39786 Polygalacturonase9.0e-0439.39Show/hide
Query:  HSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSG-ADVTKALKDAWNDACASVRPSAVVIP
        H N++ + F++ LL F   S+        + K+G    G  D++K   DAW +ACASV PS VVIP
Subjt:  HSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSG-ADVTKALKDAWNDACASVRPSAVVIP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTGATTAAGCATTCAAACTTATTGGTTACTACATTCTTGATGTCATTGCTACCATTTACTATTGAGTCTCGATCTCATGTTGGCATTATTTTTCCTTTGAGGAA
GTATGGTAATATTGTGTCTGGTGCCGATGTCACTAAGGCTTTGAAAGATGCATGGAATGATGCATGTGCATCAGTTCGTCCAAGTGCAGTGGTTATTCCAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTGATTAAGCATTCAAACTTATTGGTTACTACATTCTTGATGTCATTGCTACCATTTACTATTGAGTCTCGATCTCATGTTGGCATTATTTTTCCTTTGAGGAA
GTATGGTAATATTGTGTCTGGTGCCGATGTCACTAAGGCTTTGAAAGATGCATGGAATGATGCATGTGCATCAGTTCGTCCAAGTGCAGTGGTTATTCCAAATTGA
Protein sequenceShow/hide protein sequence
MGVIKHSNLLVTTFLMSLLPFTIESRSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIPN