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CSPI03G41050 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G41050
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUbiquitin-like protein ATG12
Genome locationChr3:35138337..35140774
RNA-Seq ExpressionCSPI03G41050
SyntenyCSPI03G41050
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0000422 - autophagy of mitochondrion (biological process)
GO:0006501 - C-terminal protein lipidation (biological process)
GO:0044804 - autophagy of nucleus (biological process)
GO:0034045 - phagophore assembly site membrane (cellular component)
GO:0034274 - Atg12-Atg5-Atg16 complex (cellular component)
InterPro domainsIPR007242 - Ubiquitin-like protein Atg12
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151012.1 ubiquitin-like protein ATG12 [Cucumis sativus]3.5e-4598.95Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_008464001.1 PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo]7.9e-4597.89Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MTSTESS+SARKVVVLLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_022153405.1 ubiquitin-like protein ATG12 [Momordica charantia]8.1e-4293.68Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M S ESSSS RKVVVLLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_022955552.1 ubiquitin-like protein ATG12 [Cucurbita moschata]6.2e-4292.63Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M S ESSSSA+KVVVLLR+ GDAPILKQ KFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_038878493.1 ubiquitin-like protein ATG12 [Benincasa hispida]1.3e-4497.89Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

TrEMBL top hitse value%identityAlignment
A0A0A0LIA6 Ubiquitin-like protein ATG121.7e-4598.95Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A1S3CKI1 Ubiquitin-like protein ATG123.8e-4597.89Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MTSTESS+SARKVVVLLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1DGR5 Ubiquitin-like protein ATG123.9e-4293.68Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M S ESSSS RKVVVLLRATGDAPILKQTKFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1GTZ1 Ubiquitin-like protein ATG123.0e-4292.63Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M S ESSSSA+KVVVLLR+ GDAPILKQ KFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1J054 Ubiquitin-like protein ATG121.5e-4190.53Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M S ESS+S++KVVVLLR+ GDAPILKQ KFKMPGTDKF+KVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

SwissProt top hitse value%identityAlignment
A2YAG8 Ubiquitin-like protein ATG123.3e-3066.29Show/hide
Query:  SSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        ++  +KVVV  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE +IDLYNNFGIDG+LVVNYA SMAWG
Subjt:  SSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q1SF86 Ubiquitin-like protein ATG124.8e-3776.84Show/hide
Query:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M + ES +S RKVVV LRATGDAPILKQ+KFK+ GTDKF KVID++RR + R++LFV+VNSAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q69NP0 Ubiquitin-like protein ATG123.3e-3066.29Show/hide
Query:  SSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        ++  +KVVV  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE +IDLYNNFGIDG+LVVNYA SMAWG
Subjt:  SSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q8S924 Ubiquitin-like protein ATG12A6.3e-3777.66Show/hide
Query:  TSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        T + S SS RKVVV LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  TSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q9LVK3 Ubiquitin-like protein ATG12B1.3e-3473.12Show/hide
Query:  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TES +S +K+VV LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Arabidopsis top hitse value%identityAlignment
AT1G54210.1 Ubiquitin-like superfamily protein4.5e-3877.66Show/hide
Query:  TSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        T + S SS RKVVV LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  TSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

AT1G54210.2 Ubiquitin-like superfamily protein1.4e-1043.62Show/hide
Query:  TSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        T + S SS RKVVV LRATG APILKQ+KFK                                            NFG DGKLVVNYACSMAWG
Subjt:  TSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

AT3G13970.1 Ubiquitin-like superfamily protein9.3e-3673.12Show/hide
Query:  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TES +S +K+VV LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCTACAGAGTCATCCAGTTCTGCTCGAAAAGTGGTTGTCCTGTTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGATGCCCGGAACAGA
CAAATTTGTTAAAGTGATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATC
TATATAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA
mRNA sequenceShow/hide mRNA sequence
CAGGCCACGGACTCCTACGAACTTACCCAACCAATATCTTTTGATCGAAATCGGAGAACGTACTCCACGAGGACGGGGATCCCGTAGTTCACGGCGAAGGAAAACGATGA
CTTCTACAGAGTCATCCAGTTCTGCTCGAAAAGTGGTTGTCCTGTTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGATGCCCGGAACAGACAAA
TTTGTTAAAGTGATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATCTATA
TAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAATTTGCAGCATGGTAATGCTTAATGCTGAGGCTGTAAATAGTATCTT
AAACAGTTCACTCTCAGTACTGTGATTTTATACTCATCCATTACGAACTATAGTGGCAGTAATCCTTTGTATTATAGACTGCTTTTCCCGACGAAAAATAAATCAGTCAA
GTTCTAGAGTCATACTTGTCAAGGTCCAGAGTTTGTAAATTAATTGTTTATTTGATCGACCTCTTTAATTAATTGTTTTAACGCTGAATATGTAAACACAAGGATATATT
GTTCCAAGATATGGAAGCTCAAATTCTTGATTATCCTACTCAGTTTCATATTTTT
Protein sequenceShow/hide protein sequence
MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFVKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG