CuGenDBv2

Gene ID	CSPI03G41190
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L34
Genome location	Chr3:35246168..35253334
RNA-Seq Expression	CSPI03G41190
Synteny	CSPI03G41190
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000271 - Ribosomal protein L34 IPR020939 - Ribosomal protein L34, conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581832.1 hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-67

91.84

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Query:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTG+SLMNRLRLSS HQNN IW SQ+LS GHGV+VTPMLFPSVSKHQTAH LQQNDTESLR+L SEGIFFPFGLPSLRFFLPDG+ SSTQEPM
Subjt:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_004141160.2 uncharacterized protein LOC101210601 [Cucumis sativus]

4.6e-120

99.55

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Query:  MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQ
        MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQ
Subjt:  MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQ

Query:  NNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFAR
        NNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQL SEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFAR
Subjt:  NNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFAR

Query:  KATKGGRKVIARRIAKGRSRITA
        KATKGGRKVIARRIAKGRSRITA
Subjt:  KATKGGRKVIARRIAKGRSRITA

XP_008447614.1 PREDICTED: uncharacterized protein LOC103490028 [Cucumis melo]

1.6e-72

97.28

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Query:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTG+S MNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQ AHPLQQNDTESLRQL SEGIFFPFGLPSLRFFLPDGDASSTQEPM
Subjt:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_022955352.1 uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata]

5.3e-68

92.52

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Query:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTG+SLMNRLRLSS HQNN IW SQ+LS GHGV+VTPMLFPSVSKHQTAH LQQNDTESLR+L SEGIFFPFGLPSLRFFLPDGD SSTQEPM
Subjt:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

XP_023526192.1 uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo]

2.6e-67

91.84

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Query:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTG+SLMNRLRLSS HQNN IW SQ+LS GHGV+VTPMLFPSVSKHQ AH LQQNDTESLR+L SEGIFFPFGLPSLRFFLPDGD SSTQEPM
Subjt:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIB6 Uncharacterized protein

2.2e-120

99.55

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Query:  MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQ
        MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQ
Subjt:  MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQ

Query:  NNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFAR
        NNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQL SEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFAR
Subjt:  NNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFAR

Query:  KATKGGRKVIARRIAKGRSRITA
        KATKGGRKVIARRIAKGRSRITA
Subjt:  KATKGGRKVIARRIAKGRSRITA

A0A1S3BHV7 uncharacterized protein LOC103490028

7.7e-73

97.28

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Query:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTG+S MNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQ AHPLQQNDTESLRQL SEGIFFPFGLPSLRFFLPDGDASSTQEPM
Subjt:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1GBE4 uncharacterized protein LOC111452439

5.9e-65

87.76

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Query:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MAS LL+RTG+SL+NRLRL+SAHQ +RIW SQ LSHGHG EVTPMLFPS+SKHQTA  LQQNDTES+R+L SEGIFFPFGLPSLRFFLPDGD S+TQEPM
Subjt:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1GTQ0 uncharacterized protein LOC111457406 isoform X2

2.6e-68

92.52

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Query:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTG+SLMNRLRLSS HQNN IW SQ+LS GHGV+VTPMLFPSVSKHQTAH LQQNDTESLR+L SEGIFFPFGLPSLRFFLPDGD SSTQEPM
Subjt:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A0A6J1IXD9 uncharacterized protein LOC111480019 isoform X2

4.8e-67

91.84

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Query:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM
        MASKLLIRTG+SLMNRLRLSS  QNN IW SQ+LS GHGV+VTPMLFPSVSKHQTAH LQQNDTESLR+L SEGIFFPFGLPSLRFFLPDGD SSTQEPM
Subjt:  MASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

SwissProt top hits

e value

%identity

Alignment

A3QJT4 50S ribosomal protein L34

2.0e-09

74.42

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Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

A8HAI3 50S ribosomal protein L34

2.0e-09

74.42

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Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

B0TQH4 50S ribosomal protein L34

2.0e-09

74.42

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Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR AT GGRKVIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Q15MS4 50S ribosomal protein L34

2.0e-09

74.42

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Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKR+HGF AR ATK GRKVIA R AKGR+R+TA
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Q47U32 50S ribosomal protein L34

2.0e-09

74.42

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Query:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        KRTFQPS ++RKRNHGF AR ATK GR VIARR AKGR+R++A
Subjt:  KRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Arabidopsis top hits

e value

%identity

Alignment

AT3G13882.1 Ribosomal protein L34

1.2e-38

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Query:  MASKLLIRTGSSLMNRL---RLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQ
        MA+K LIR+G+SLMNR      ++  QNN     Q ++   G E+ P  FPS+S  Q++   + NDT SL++L+  G  +P GLPSL FFLP+ D SS  
Subjt:  MASKLLIRTGSSLMNRL---RLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQ

Query:  EPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
        EP+LLFPKRTFQPSTIRRKRNHGFFARKATKGGR+VIARRIAKGR R+TA
Subjt:  EPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

AT3G13882.2 Ribosomal protein L34

8.8e-29

48.05

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Query:  GVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLP--------DGDASS-----------------------------------
        G E+ P  FPS+S  Q++   + NDT SL++L+  G  +P GLPSL FFLP        D   SS                                   
Subjt:  GVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLP--------DGDASS-----------------------------------

Query:  --TQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA
          + EP+LLFPKRTFQPSTIRRKRNHGFFARKATKGGR+VIARRIAKGR R+TA
Subjt:  --TQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSRITA

Sequences

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CDS sequence

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ATGAAAAGAAAAAGGAAATGTACCCTACGGTTCCTCGCACTTCTGTTCACACCCCACCCCACCTTCGCCACAGCGCACACCGCCGCTAACCCACAGGGAATTTTCTTTCT
TCTCCCTCGATCTCCAGCGGCAGCTACACCAACTTTTCATTTTGCTGCACACTGTCACCAACCTCACTGCCACGCCCACCTTTTATTTCTAAGGGTTAGTGAGCTCGTTC
TTTTGCTAATGGCGTCCAAACTTCTTATTCGTACGGGAAGTTCTTTGATGAATCGATTGCGATTAAGCTCAGCGCATCAGAATAACAGGATTTGGGGTAGCCAAGCTCTG
TCCCATGGCCATGGCGTTGAAGTTACTCCGATGCTTTTTCCTTCAGTTTCTAAGCACCAGACTGCTCATCCTTTGCAGCAGAATGACACCGAATCGTTGAGGCAGCTCCA
TTCGGAAGGCATTTTCTTTCCTTTTGGGCTTCCTTCGCTCCGGTTCTTTTTGCCTGACGGAGATGCTTCTTCAACACAAGAACCGATGCTCTTATTTCCTAAAAGGACAT
TTCAACCTAGCACCATCAGGCGAAAAAGGAATCATGGTTTTTTTGCTCGCAAAGCAACCAAGGGAGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGGCGCTCAAGA
ATAACTGCATAA

mRNA sequence

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Protein sequence

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MKRKRKCTLRFLALLFTPHPTFATAHTAANPQGIFFLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRLSSAHQNNRIWGSQAL
SHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLHSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIAKGRSR
ITA

CSPI03G41190 (gene) of Cucumber (PI 183967) v1 genome