CuGenDBv2

Gene ID	CSPI03G41410
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	mediator of RNA polymerase II transcription subunit 9-like
Genome location	Chr3:35527768..35530504
RNA-Seq Expression	CSPI03G41410
Synteny	CSPI03G41410
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR038790 - Mediator of RNA polymerase II transcription subunit 9, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574160.1 Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-81

77.03

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Query:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP
        MDF  GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL    QQQQQQQQQQQQQQ+FHHQQQQFQPQIQ QQQFQQQQLSPQFQQQQPSPQIQPQQQP
Subjt:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP

Query:  SPQFQQQLQPQHFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD
        SPQFQQQLQPQHFP QQQQQQQQQQYHF                    QQQQQQQQQQQQQQQQQQYHQHQSLASHFHL HLVEKLAD IENG RDQQSD
Subjt:  SPQFQQQLQPQHFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD

Query:  ALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        AL                              VNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Subjt:  ALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

KAG7013214.1 Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-80

76.35

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Query:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP
        MDF  GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL    QQQQQQQQQQQQQQ+FHHQQQQFQPQIQ QQQFQQQQLSPQFQQQQPSPQIQPQQQP
Subjt:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP

Query:  SPQFQQQLQPQHFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD
        SPQFQQQLQPQHFP QQ QQQQQQQYHF                    QQQQQQQQQQQQQQQQQQYHQHQSLASHFHL HLVEKLAD IENG RDQQSD
Subjt:  SPQFQQQLQPQHFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD

Query:  ALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        AL                              +NDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Subjt:  ALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

XP_011652352.2 mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus]

8.5e-98

88.22

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Query:  MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPS
        MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQH   QQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPS
Subjt:  MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPS

Query:  PQFQQQLQPQHFP-QQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD
        PQFQQQLQ QHFP QQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD
Subjt:  PQFQQQLQPQHFP-QQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD

Query:  ALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
        AL                              VNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
Subjt:  ALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

XP_022944890.1 mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata]

4.2e-81

76.77

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Query:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP
        MDF  GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL     QQQQQQQQQQQQQ+FHHQQQQFQPQIQ QQQFQQQQLSPQFQQQQPSPQ QPQQQP
Subjt:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP

Query:  SPQFQQQLQPQHFP-QQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQS
        SPQFQQQLQPQHFP QQQQQQQQQQQYHF                   QQQQQQQQQQQQQQQQQQQYHQHQSLASHFHL HLVEKLAD IENG RDQQS
Subjt:  SPQFQQQLQPQHFP-QQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQS

Query:  DALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        DAL                              VNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Subjt:  DALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

XP_038903145.1 mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida]

5.7e-86

80.39

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Query:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP
        MDF GGGNWSMIPNIPNLTNSSNLS QES+F   QQFSL      QQQQQQ QQQQQ+FHHQQQQFQPQIQPQQQFQQQQ SPQFQQQQPSPQIQPQQQP
Subjt:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP

Query:  SPQFQQQLQPQHFPQQQQQQQQQQQYHF---------QQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIE
        SPQFQQQLQPQHFPQQQQQQQQQQQYHF         QQQQQQQ+  QQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIE
Subjt:  SPQFQQQLQPQHFPQQQQQQQQQQQYHF---------QQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIE

Query:  NGTRDQQSDALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEE
        NGTRDQQSDAL                              VNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEE
Subjt:  NGTRDQQSDALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEE

Query:  LVKGEP
        LVKG+P
Subjt:  LVKGEP

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D301 Mediator of RNA polymerase II transcription subunit 9

8.4e-75

73.65

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Query:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP
        MDF GGGNWSMIPNIP L+NSSNLS QES++LQQQQFSL              QQQQ FHHQQQQFQPQ+QP QQFQQQQ SPQFQQQQPSPQIQP QQP
Subjt:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP

Query:  SPQFQQQLQPQHFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD
        SPQFQQQLQPQHFP   QQQQQQQQYHF          QQQQQQQQQ+  QQQQQQQQQQQQQQQQYHQHQSLASHFHL HLVEKLADAIENG RDQQSD
Subjt:  SPQFQQQLQPQHFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD

Query:  ALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        AL                              VNDLNNHFEKC+QLLNSISGSLSSKAMTV+GQKKKLEEH+QLL+HRRELIGKYKNSVEELVKG+
Subjt:  ALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

A0A6J1FZC2 mediator of RNA polymerase II transcription subunit 9-like

2.1e-81

76.77

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Query:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP
        MDF  GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSL     QQQQQQQQQQQQQ+FHHQQQQFQPQIQ QQQFQQQQLSPQFQQQQPSPQ QPQQQP
Subjt:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP

Query:  SPQFQQQLQPQHFP-QQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQS
        SPQFQQQLQPQHFP QQQQQQQQQQQYHF                   QQQQQQQQQQQQQQQQQQQYHQHQSLASHFHL HLVEKLAD IENG RDQQS
Subjt:  SPQFQQQLQPQHFP-QQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQS

Query:  DALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        DAL                              VNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Subjt:  DALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

A0A6J1GCY0 mediator of RNA polymerase II transcription subunit 9-like

6.8e-77

73.49

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Query:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP
        MDF GGGNWSMIPNIP L+NSSNLS QES++LQQQQFSL       QQQQQQQQQQ +FHHQ QQFQPQIQPQQQFQQQQ SPQFQQ QPSPQIQPQQQ 
Subjt:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP

Query:  SPQFQQQLQPQHFP-QQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQS
        S QFQQQ+QPQHFP QQQQQQQQQQQYHF  QQQQQRLL                 QQQQQQQ+QQQYHQHQSLASHFHL HLVEKLADAIE G RDQQS
Subjt:  SPQFQQQLQPQHFP-QQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQS

Query:  DALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
        DAL                              VNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLLS+RRELIGKYK+SVEEL KGEP
Subjt:  DALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

A0A6J1HX54 Mediator of RNA polymerase II transcription subunit 9

8.1e-70

66.23

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Query:  MDFPGGGNWSMIPNIPNLTNSSNLS----------QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPS
        MDF  GGNWSMIPNIPNL+NSSNLS          QES++LQQQQFSL        QQQQQQQQQQ+FH QQQQFQPQIQ QQQFQQQQLSPQFQ     
Subjt:  MDFPGGGNWSMIPNIPNLTNSSNLS----------QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPS

Query:  PQIQPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIE
             QQQPSPQFQQQLQPQHFP  QQQQQQQQQYHF                              QQQQQQQQYHQHQSLASHFHL HLVEKLAD IE
Subjt:  PQIQPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIE

Query:  NGTRDQQSDALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEE
        NG RDQQSDAL                              VNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEE
Subjt:  NGTRDQQSDALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEE

Query:  LVKGE
        LVKGE
Subjt:  LVKGE

A0A6J1K651 mediator of RNA polymerase II transcription subunit 9-like

3.6e-78

74.41

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Query:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP
        MDF GGGNWSMIPNIP L+NSSNLS QES++LQQQQFSL     QQQQQQQQQQQQ +FHHQ QQFQPQIQPQQQFQQQQ SPQFQQ QPSPQIQPQQQ 
Subjt:  MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQP

Query:  SPQFQQQLQPQHFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD
        S QFQQQ+QPQHFP QQQQQQQQQQYHF  QQQQQRLL                 QQQQQQQ+QQQYHQHQSLASHFHL HLVEKLADAIE G RDQQSD
Subjt:  SPQFQQQLQPQHFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSD

Query:  ALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
        AL                              VNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLLS+RRELIGKYK+SVEELVKGEP
Subjt:  ALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

SwissProt top hits

e value

%identity

Alignment

Q8RWA2 Mediator of RNA polymerase II transcription subunit 9

3.3e-20

48.82

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Query:  GGGNWSMIPNIP---NLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPSP
        GGGNWSMIPN+    N    +N  Q+ +FLQQQQ  LQ QQQQQQQQQ   QQQQ    QQQQFQPQ                           QQQ   
Subjt:  GGGNWSMIPNIP---NLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPSP

Query:  QFQQQLQPQHFPQQQQQQQQQ---QQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQS
        Q+QQ  Q QHF QQQQ QQQQ   Q    Q Q  Q    QQ      Q      QQQQQ  Q   Q   QHQSLASHFHL  +VEKLAD IENGTRDQ S
Subjt:  QFQQQLQPQHFPQQQQQQQQQ---QQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQS

Query:  DALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        DAL                              VN+LN+HF+KC+QLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Subjt:  DALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

Arabidopsis top hits

e value

%identity

Alignment

AT1G55080.1 MED9

2.4e-21

48.82

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Query:  GGGNWSMIPNIP---NLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPSP
        GGGNWSMIPN+    N    +N  Q+ +FLQQQQ  LQ QQQQQQQQQ   QQQQ    QQQQFQPQ                           QQQ   
Subjt:  GGGNWSMIPNIP---NLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPSP

Query:  QFQQQLQPQHFPQQQQQQQQQ---QQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQS
        Q+QQ  Q QHF QQQQ QQQQ   Q    Q Q  Q    QQ      Q      QQQQQ  Q   Q   QHQSLASHFHL  +VEKLAD IENGTRDQ S
Subjt:  QFQQQLQPQHFPQQQQQQQQQ---QQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQS

Query:  DALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        DAL                              VN+LN+HF+KC+QLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Subjt:  DALVAILIVFKKKSLRLIKILFALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCTAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTC
TCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATCCAACCCCAACAGC
AATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACAGCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCTCAATTTCAACAGCAATTGCAACCCCAA
CATTTCCCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAACAGCAGCAACAACAGCAACA
GCAACAGCAGCAGCAACAACAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATCTTGTGGAGA
AATTAGCGGATGCAATCGAGAACGGAACTAGAGATCAGCAATCTGATGCATTGGTAGCAATTTTGATTGTTTTTAAAAAAAAATCCTTAAGATTAATTAAAATCTTGTTT
GCTCTGATAATTTGTTCTTGTAACGTTTGGAAGGTTAATGATCTAAATAACCACTTTGAGAAGTGCCGGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGC
TATGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTGTTAAGTCATCGAAGGGAATTGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGG
GCGAGCCCTAG

mRNA sequence

Show/hide mRNA sequence

GCTCTCCATTTATCTCAAAACTCTTCTTTTAAAATCTTTAATGCCTTAGAAATAGAATGTATCCTTTTTGTTTTTCTTTTTTGGCAATTTAAATTTTCAAATCCCAAACA
ATCTCGCGAACCCTAATTTCTAAAATTCCGAAATACGAAGAAGAAGAAAGCAAATAAATCAGCAATATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACAT
CCCTAATCTCACCAATTCCTCTAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATCCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACAGCAACAA
CCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCTCAATTTCAACAGCAATTGCAACCCCAACATTTCCCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATA
TCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAGCAGCAACAACAGCAACAGCAACAGCAACAGCAGC
AGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATCTTGTGGAGAAATTAGCGGATGCAATCGAGAACGGAACTAGAGATCAGCAATCT
GATGCATTGGTAGCAATTTTGATTGTTTTTAAAAAAAAATCCTTAAGATTAATTAAAATCTTGTTTGCTCTGATAATTTGTTCTTGTAACGTTTGGAAGGTTAATGATCT
AAATAACCACTTTGAGAAGTGCCGGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGC
AGTTGTTAAGTCATCGAAGGGAATTGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGGGCGAGCCCTAGCTATTTTGCTCCCATTCTGCATTAGGCATGGCT
AGCATCATGTTCCCATTTTCAAGTGATGTCAAAATTACTTTTCACCGATTCGCACAACTCCATGGAGAGATTCTTATACCTAATCTGCTTGCTCATGCATTTCCTAACCA
TAATGATGTTGAATGGAACCCTTTCTGTACTTCAATGCTATGGGGCACCACTTTTTCTGGAAATTCATTTACCTCTCGTTTAACTTGTACAGTTATTCCAACAGCTTACA
CTTTTAACTCCTTTTTTTGCGACAATATGTGGTTTGAAAATATTGAACATCTAACTTCATTTTTTTTTTTTTAATACAAGTACAATACTTGTTGAGTAGAG

Protein sequence

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MDFPGGGNWSMIPNIPNLTNSSNLSQESIFLQQQQFSLQHQQQQQQQQQQQQQQQQAFHHQQQQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPSPQFQQQLQPQ
HFPQQQQQQQQQQQYHFQQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSDALVAILIVFKKKSLRLIKILF
ALIICSCNVWKVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

CSPI03G41410 (gene) of Cucumber (PI 183967) v1 genome