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CSPI03G41700 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G41700
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr3:35784112..35784765
RNA-Seq ExpressionCSPI03G41700
SyntenyCSPI03G41700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]2.6e-2062.65Show/hide
Query:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI
        M PDV +Q MGF    DLW   QD FGVQSR EEDFL Q   TTRK N KME+YL +MKTN DNL Q GSPVP R+ ISQ ++
Subjt:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI

KAA0057475.1 uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa]1.6e-3354.27Show/hide
Query:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIPI--------
        MVPDV LQ MGFNT +DLW+ IQ+LFG++SR EE FL  TF TTR+ NYKMEDYLRIMK N DNL QAGSPVP R  ISQ ++ +D +  P+        
Subjt:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIPI--------

Query:  ---------------NLVEIDLIKIDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQ
                       NLVEI LIK++S   T  MA  VVEEEN+G NP+ NG Q    AFI TQ
Subjt:  ---------------NLVEIDLIKIDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQ

KAA0060208.1 Integrase, catalytic core [Cucumis melo var. makuwa]8.2e-2264.84Show/hide
Query:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIP
        M  +V  Q MGFNT +DL + IQDLFGVQSR EEDFL  TF TTRK N KMEDYLRIMKTN +NL QAGSP+P RS ISQ ++ +D +  P
Subjt:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIP

KGN44003.1 hypothetical protein Csa_016232 [Cucumis sativus]3.7e-2263.16Show/hide
Query:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIPINLV
        M P+V LQ MGFNT +DLW+ IQDLFGVQ R EEDFL  TF TT+K N KMEDYL  MKTN DNL QAGS VP  S ISQ ++ +D I  P+  V
Subjt:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIPINLV

KGN59849.1 hypothetical protein Csa_001181 [Cucumis sativus]7.3e-7197.9Show/hide
Query:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMIIDRILIPINLVEIDLIK
        MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTF+TTRKDNY MEDYLRIMKTNTDNLSQAGSPVPPRSSISQG+IIDRILIPINLVEIDLIK
Subjt:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMIIDRILIPINLVEIDLIK

Query:  IDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQNPT
        IDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQNPT
Subjt:  IDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQNPT

TrEMBL top hitse value%identityAlignment
A0A0A0K3F9 Uncharacterized protein1.8e-2263.16Show/hide
Query:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIPINLV
        M P+V LQ MGFNT +DLW+ IQDLFGVQ R EEDFL  TF TT+K N KMEDYL  MKTN DNL QAGS VP  S ISQ ++ +D I  P+  V
Subjt:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIPINLV

A0A0A0LFV1 Uncharacterized protein3.5e-7197.9Show/hide
Query:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMIIDRILIPINLVEIDLIK
        MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTF+TTRKDNY MEDYLRIMKTNTDNLSQAGSPVPPRSSISQG+IIDRILIPINLVEIDLIK
Subjt:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMIIDRILIPINLVEIDLIK

Query:  IDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQNPT
        IDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQNPT
Subjt:  IDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQNPT

A0A5A7SIT7 Uncharacterized protein1.3e-2062.65Show/hide
Query:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI
        M PDV +Q MGF    DLW   QD FGVQSR EEDFL Q   TTRK N KME+YL +MKTN DNL Q GSPVP R+ ISQ ++
Subjt:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI

A0A5A7UY76 Integrase, catalytic core4.0e-2264.84Show/hide
Query:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIP
        M  +V  Q MGFNT +DL + IQDLFGVQSR EEDFL  TF TTRK N KMEDYLRIMKTN +NL QAGSP+P RS ISQ ++ +D +  P
Subjt:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIP

A0A5D3E3L7 Uncharacterized protein7.7e-3454.27Show/hide
Query:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIPI--------
        MVPDV LQ MGFNT +DLW+ IQ+LFG++SR EE FL  TF TTR+ NYKMEDYLRIMK N DNL QAGSPVP R  ISQ ++ +D +  P+        
Subjt:  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMI-IDRILIPI--------

Query:  ---------------NLVEIDLIKIDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQ
                       NLVEI LIK++S   T  MA  VVEEEN+G NP+ NG Q    AFI TQ
Subjt:  ---------------NLVEIDLIKIDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCCAGATGTAACACTTCAATTTATGGGTTTTAACACAACAAGGGACCTTTGGAAAGTGATTCAAGACTTATTTGGAGTTCAATCAAGAGTTGAAGAAGATTTTCT
TCATCAAACCTTTCATACTACTCGAAAAGATAATTATAAGATGGAAGATTACTTGAGAATTATGAAAACCAACACGGATAATCTCAGCCAGGCCGGGAGCCCTGTACCTC
CTCGCTCTTCAATTTCACAGGGAATGATAATCGACAGAATTCTAATTCCTATCAATTTGGTGGAAATCGATTTAATCAAAATAGACAGCGCAGTGGGAACAACTTCAATG
GCCGTGGGCGTGGTCGAGGAAGAGAACAAGGGACATAATCCAAGCAACAATGGAAATCAAAGTTTAGCTACTGCCTTTATAGTTACTCAGAACCCGACT
mRNA sequenceShow/hide mRNA sequence
ATGGTGCCAGATGTAACACTTCAATTTATGGGTTTTAACACAACAAGGGACCTTTGGAAAGTGATTCAAGACTTATTTGGAGTTCAATCAAGAGTTGAAGAAGATTTTCT
TCATCAAACCTTTCATACTACTCGAAAAGATAATTATAAGATGGAAGATTACTTGAGAATTATGAAAACCAACACGGATAATCTCAGCCAGGCCGGGAGCCCTGTACCTC
CTCGCTCTTCAATTTCACAGGGAATGATAATCGACAGAATTCTAATTCCTATCAATTTGGTGGAAATCGATTTAATCAAAATAGACAGCGCAGTGGGAACAACTTCAATG
GCCGTGGGCGTGGTCGAGGAAGAGAACAAGGGACATAATCCAAGCAACAATGGAAATCAAAGTTTAGCTACTGCCTTTATAGTTACTCAGAACCCGACT
Protein sequenceShow/hide protein sequence
MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFHTTRKDNYKMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGMIIDRILIPINLVEIDLIKIDSAVGTTSM
AVGVVEEENKGHNPSNNGNQSLATAFIVTQNPT