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CSPI03G41800 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G41800
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGolgin subfamily A member 6-like protein 22 isoform X2
Genome locationChr3:35886597..35887204
RNA-Seq ExpressionCSPI03G41800
SyntenyCSPI03G41800
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0019222 - regulation of metabolic process (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054311.1 golgin subfamily A member 6-like protein 22 isoform X2 [Cucumis melo var. makuwa]2.3e-1052.69Show/hide
Query:  DVHIWSPNPSQGFSCNSLF-NLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIA
        DV + +PNPS GF C SLF  LLDP P    +F +V R K  KKVRFF W VL+  V  MD L RK++S + PFCCIL  +     II FGIA
Subjt:  DVHIWSPNPSQGFSCNSLF-NLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIA

KAA0054681.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]2.1e-0643.48Show/hide
Query:  SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIASSCGLCGVL
        S GFS      LLD  P    +F++VWR K  KKVRFFIW VL+ CVN   +L  +       F     GR RK  IIF+G  +  G CG L
Subjt:  SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIASSCGLCGVL

TYK08591.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-0643.48Show/hide
Query:  SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIASSCGLCGVL
        S GFS      LLD  P    +F++VWR K  KKVRFFIW VL+ CVN   +L  +       F     GR RK  IIF+G  +  G CG L
Subjt:  SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIASSCGLCGVL

TYK29954.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-1150Show/hide
Query:  DVHIWSPNPSQGFSCNSLFN-LLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRK
        +VH+WS NPSQGFS  SLF+ LLDP P    +F+ VWRIK  KKVRFF W VL+   N +D L R+        CCIL  + ++
Subjt:  DVHIWSPNPSQGFSCNSLFN-LLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRK

XP_008464727.1 PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo]4.7e-1153.25Show/hide
Query:  DVHIWSPNPSQGFSCNSLFNLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCIL
        D+H+W+PNPS GFS  SL  LLDP P    +F +VW     KKV FFIW VL+  VN +D L R+++S VG FCC+L
Subjt:  DVHIWSPNPSQGFSCNSLFNLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCIL

TrEMBL top hitse value%identityAlignment
A0A1S3CMM8 uncharacterized protein LOC1035025432.3e-1153.25Show/hide
Query:  DVHIWSPNPSQGFSCNSLFNLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCIL
        D+H+W+PNPS GFS  SL  LLDP P    +F +VW     KKV FFIW VL+  VN +D L R+++S VG FCC+L
Subjt:  DVHIWSPNPSQGFSCNSLFNLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCIL

A0A5A7UL95 Golgin subfamily A member 6-like protein 22 isoform X21.1e-1052.69Show/hide
Query:  DVHIWSPNPSQGFSCNSLF-NLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIA
        DV + +PNPS GF C SLF  LLDP P    +F +V R K  KKVRFF W VL+  V  MD L RK++S + PFCCIL  +     II FGIA
Subjt:  DVHIWSPNPSQGFSCNSLF-NLLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIA

A0A5A7UMB2 Retrotransposon protein, putative, unclassified9.9e-0743.48Show/hide
Query:  SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIASSCGLCGVL
        S GFS      LLD  P    +F++VWR K  KKVRFFIW VL+ CVN   +L  +       F     GR RK  IIF+G  +  G CG L
Subjt:  SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIASSCGLCGVL

A0A5D3C9P5 Ty3/gypsy retrotransposon protein9.9e-0743.48Show/hide
Query:  SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIASSCGLCGVL
        S GFS      LLD  P    +F++VWR K  KKVRFFIW VL+ CVN   +L  +       F     GR RK  IIF+G  +  G CG L
Subjt:  SQGFSCNSLFNLLD-PPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIASSCGLCGVL

A0A5D3E255 Reverse transcriptase1.7e-1150Show/hide
Query:  DVHIWSPNPSQGFSCNSLFN-LLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRK
        +VH+WS NPSQGFS  SLF+ LLDP P    +F+ VWRIK  KKVRFF W VL+   N +D L R+        CCIL  + ++
Subjt:  DVHIWSPNPSQGFSCNSLFN-LLDP-PQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTCATATTTGGAGCCCTAATCCTAGCCAGGGTTTCTCGTGTAACTCATTGTTCAATCTGTTGGATCCTCCCCAATTAGGGAGTTTGTTTTTTATGGTCTGGAG
GATTAAGAATTTGAAGAAAGTTAGGTTTTTTATTTGGTTTGTTTTGATAAGTTGTGTGAACACTATGGATATTTTGGCAAGGAAAAAGTCCTCGTTTGTTGGGCCTTTTT
GCTGTATTCTTTCCGGAAGGCGGAGGAAGACCTGTATAATCTTTTTTGGGATTGCAAGTTCGTGCGGGCTGTGTGGAGTTCTTTTTTTGTAG
mRNA sequenceShow/hide mRNA sequence
CTGAGACTTCTGTGTCCTTTTCCTTTGGGTTCCGTCATCATTTGTCCAATAGGAAAATGACATAAGTGACCTCTCTTCTTTCTTTGCTCGAGGGCTGTGATTTTAGCGTG
GGAAGAATGGATGTTCATATTTGGAGCCCTAATCCTAGCCAGGGTTTCTCGTGTAACTCATTGTTCAATCTGTTGGATCCTCCCCAATTAGGGAGTTTGTTTTTTATGGT
CTGGAGGATTAAGAATTTGAAGAAAGTTAGGTTTTTTATTTGGTTTGTTTTGATAAGTTGTGTGAACACTATGGATATTTTGGCAAGGAAAAAGTCCTCGTTTGTTGGGC
CTTTTTGCTGTATTCTTTCCGGAAGGCGGAGGAAGACCTGTATAATCTTTTTTGGGATTGCAAGTTCGTGCGGGCTGTGTGGAGTTCTTTTTTTGTAGGAGTTTGATGTT
AGCTTCGCTGGTCAAAGAAGTATTTGTGTGTTGATCAAGAAATTCCTCCTCCATCCGCTTTTCAAAAAGGCTGTTTTTTGTCGCTTGCTAGCGTGTATTTGGAATATTTG
AGGGAGAGGAATGATAAGGTATTTAGAGGAAGAGATAGGAGCCCTTATGATGTTTGGT
Protein sequenceShow/hide protein sequence
MDVHIWSPNPSQGFSCNSLFNLLDPPQLGSLFFMVWRIKNLKKVRFFIWFVLISCVNTMDILARKKSSFVGPFCCILSGRRRKTCIIFFGIASSCGLCGVLFL