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CSPI03G42350 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G42350
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationChr3:36407249..36407572
RNA-Seq ExpressionCSPI03G42350
SyntenyCSPI03G42350
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062610.1 putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo var. makuwa]5.0e-0764.29Show/hide
Query:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
        MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Subjt:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
KAE8653635.1 hypothetical protein Csa_006994 [Cucumis sativus]1.3e-0764.29Show/hide
Query:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
        MHSLLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMD+LI+
Subjt:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
TYK29700.1 putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo var. makuwa]5.0e-0764.29Show/hide
Query:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
        MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Subjt:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
XP_011648557.1 putative E3 ubiquitin-protein ligase LIN-1 [Cucumis sativus]1.3e-0764.29Show/hide
Query:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
        MHSLLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMD+LI+
Subjt:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
XP_016902915.1 PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo]5.0e-0764.29Show/hide
Query:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
        MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Subjt:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
TrEMBL top hitse value%identityAlignment
A0A0A0M114 RING-type E3 ubiquitin transferase6.4e-0864.29Show/hide
Query:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
        MHSLLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMD+LI+
Subjt:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
A0A1S4E4L5 RING-type E3 ubiquitin transferase2.4e-0764.29Show/hide
Query:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
        MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Subjt:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
A0A5A7V5V1 RING-type E3 ubiquitin transferase2.4e-0764.29Show/hide
Query:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
        MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Subjt:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
A0A5D3E2B9 RING-type E3 ubiquitin transferase2.4e-0764.29Show/hide
Query:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
        MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Subjt:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
A0A6J1L0K6 RING-type E3 ubiquitin transferase3.5e-0660.71Show/hide
Query:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
        MHSLL YLQTA RDQ P+V G  L             VEP KMSIYREEAMDVLI+
Subjt:  MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTCCCTCTTGATATACTTACAAACTGCCAGAAGAGATCAATCCCCTATTGTGGTTGGCTACAACTTGATGTCTTGGAATGAGTATACCATTTTCTGTTCTAGCAA
GGTGGAACCACCGAAGATGAGTATCTATCGTGAAGAGGCAATGGATGTTCTTATTAACCCT
mRNA sequenceShow/hide mRNA sequence
ATGCACTCCCTCTTGATATACTTACAAACTGCCAGAAGAGATCAATCCCCTATTGTGGTTGGCTACAACTTGATGTCTTGGAATGAGTATACCATTTTCTGTTCTAGCAA
GGTGGAACCACCGAAGATGAGTATCTATCGTGAAGAGGCAATGGATGTTCTTATTAACCCT
Protein sequenceShow/hide protein sequence
MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLINP