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CSPI03G42730 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G42730
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein RADIALIS-like 3
Genome locationChr3:36698703..36699848
RNA-Seq ExpressionCSPI03G42730
SyntenyCSPI03G42730
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]1.9e-46100Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
        MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]3.4e-4096.55Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRS PAARGF FLDQEQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQR

XP_022138113.1 protein RADIALIS-like 3 [Momordica charantia]1.2e-3783.16Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
        MGS GSNWTAKQNKVFENALA+YDKDTP+RW NLARAVGGKTAEEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGF F+D+E+RMRSL+L+
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN

XP_022941099.1 protein RADIALIS-like 3 [Cucurbita moschata]1.3e-3681.91Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
        M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]3.1e-4190.43Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
        MGSGS+WTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRS PA RGF F+D+EQRMRSL+L+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein9.0e-47100Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
        MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN

A0A1S3CPA0 protein RADIALIS-like 31.6e-4096.55Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRS PAARGF FLDQEQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQR

A0A5D3D7Z0 Protein RADIALIS-like 31.6e-4096.55Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRS PAARGF FLDQEQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQR

A0A6J1CC55 protein RADIALIS-like 35.8e-3883.16Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
        MGS GSNWTAKQNKVFENALA+YDKDTP+RW NLARAVGGKTAEEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGF F+D+E+RMRSL+L+
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN

A0A6J1FM85 protein RADIALIS-like 36.4e-3781.91Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
        M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.5e-2762.64Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL
        S  +WTAKQNK FE ALA YD+DTP RWQN+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR S     G     +E+RMR+++L
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL

Q1A173 Protein RADIALIS-like 63.9e-2357.3Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL
        S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+     +R     D  ++M++L++
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL

Q58FS3 Transcription factor RADIALIS1.2e-2458.7Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL
        GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+G+VPFPNYR +     G      E+R R+L++
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL

Q6NNN0 Protein RADIALIS-like 33.0e-2367.14Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        M S ++WT K+NK+FE ALA YD+DTP+RW N+ARAVGGK+AEEV+RHYE L+ DVN IE+G+ P PNYR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

Q9SIJ5 Protein RADIALIS-like 23.2e-2558.7Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL
        GSGS WT KQNK FE ALA+YD+DTP+RW N+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+ +   +      D+E+RMRS++L
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.8e-2367.14Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        M S S+WT+KQNK+FE ALA+YDKDTP+RWQN+A+AVG K+AEEVKRHY+ LVED+  IE   VP P Y+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.1 RAD-like 61.1e-2371.21Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.2 RAD-like 62.8e-2457.3Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL
        S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+     +R     D  ++M++L++
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL

AT2G21650.1 Homeodomain-like superfamily protein2.3e-2658.7Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL
        GSGS WT KQNK FE ALA+YD+DTP+RW N+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+ +   +      D+E+RMRS++L
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL

AT4G39250.1 RAD-like 13.2e-2862.64Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL
        S  +WTAKQNK FE ALA YD+DTP RWQN+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR S     G     +E+RMR+++L
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCTGGATCCAATTGGACGGCCAAACAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCAGAATCTGGCCAGAGCCGT
CGGGGGCAAGACCGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGTAC
CTGCCGCCCGAGGATTTTACTTTCTTGACCAAGAACAAAGGATGAGGAGTCTGCAATTGAATTAA
mRNA sequenceShow/hide mRNA sequence
GTCGAACCCACTTGCCCATAGAATTCGGTTTGTGTAATTGGAATTAGTATTTAAACCATCAGAAAATGGCAGCAAAAAAGGAAAAAAACAATCGAGCACTGATCTGGAAA
AATTGATAGTGTGTACGAGGGGGAGTTGATTTGATAGGATGGGGTCTGGATCCAATTGGACGGCCAAACAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAA
GACACGCCGGAGCGGTGGCAGAATCTGGCCAGAGCCGTCGGGGGCAAGACCGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAAC
CGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGTACCTGCCGCCCGAGGATTTTACTTTCTTGACCAAGAACAAAGGATGAGGAGTCTGCAATTGAATTAAAGTAGGA
ATGTGGGAAGAGAGGAGTTCTACGTTTCTATCTCTCCATTAACTTTTTCTTCAGCTAAAACTTGAAATTTGCAAGCAACAAATATTTATGAAATATGAAGGCCAAATGTA
GCTAAGGCAGTTTTAATTTTCTTCACCCATCTTCAATTGTAATTTCTAGTTTTTACCTTTTATCTTTTATCTTTTATCAACTGTCTC
Protein sequenceShow/hide protein sequence
MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN