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CSPI03G42770 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G42770
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein RADIALIS-like 3
Genome locationChr3:36727906..36728571
RNA-Seq ExpressionCSPI03G42770
SyntenyCSPI03G42770
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60114.2 hypothetical protein Csa_000871 [Cucumis sativus]1.7e-44100Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

XP_008466554.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]1.7e-44100Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]1.2e-3489.66Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR
        MASSSVTS  GFYSSWTK+ENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR

XP_022936283.1 protein RADIALIS-like 3 [Cucurbita moschata]1.1e-3890.43Show/hide
Query:  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Subjt:  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]2.3e-3387.21Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNG
        MASSS T+ HGFYSSWTK+ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKN G NG
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNG

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein8.4e-45100Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A1S3CRN8 protein RADIALIS-like 48.4e-45100Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A5A7TE80 Protein RADIALIS-like 38.4e-45100Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A6J1DP29 protein RADIALIS-like 46.0e-3589.66Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR
        MASSSVTS  GFYSSWTK+ENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR

A0A6J1FCU5 protein RADIALIS-like 35.3e-3990.43Show/hide
Query:  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Subjt:  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 19.3e-1751.04Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR
        MASSS++S      SWT K+NK FE+ALA +D+DTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR   +++R
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR

Q1G3C4 Protein RADIALIS-like 42.1e-1658.02Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA FD+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN

Q6NNN0 Protein RADIALIS-like 38.4e-1858.82Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCN
        MAS+S++S+    +SWT+KENK FE ALA +D+DTPDR+  VARAV GGK+AEE RR YELL+RDV  IE+G+   P Y++ G N
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCN

Q8GW75 Protein RADIALIS-like 51.0e-1551.61Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD
        MASSS++S+    SSWT K+NK FE ALA +D+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  + G   RG  D
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD

Q9SIJ5 Protein RADIALIS-like 21.2e-1657.3Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG
        MAS S++S      SWT K+NK FE ALA +D+DTPDR+  VARAV GGKT EEA+R Y+LLVRD+  IE G V  P YK   G + RG
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 57.3e-1751.61Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD
        MASSS++S+    SSWT K+NK FE ALA +D+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  + G   RG  D
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD

AT1G75250.1 RAD-like 66.2e-1650.55Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYAD
        MAS+S +S     S WT  +NK FE ALA +D+DTPDR+  VA+AV GGKT EE +R Y++LV D+  IE G+V +P YK    N R   D
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYAD

AT2G18328.1 RAD-like 41.5e-1758.02Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA FD+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN

AT2G21650.1 Homeodomain-like superfamily protein8.6e-1857.3Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG
        MAS S++S      SWT K+NK FE ALA +D+DTPDR+  VARAV GGKT EEA+R Y+LLVRD+  IE G V  P YK   G + RG
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRG

AT4G39250.1 RAD-like 16.6e-1851.04Show/hide
Query:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR
        MASSS++S      SWT K+NK FE+ALA +D+DTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR   +++R
Subjt:  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCAAGCTCTGTCACGTCGACACATGGCTTTTACTCATCCTGGACCAAAAAGGAAAACAAGAAATTTGAGGAGGCATTGGCCTTCTTTGACGAGGACACACCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACCGCTGAGGAAGCAAGAAGGCTTTATGAGTTACTAGTACGAGATGTCAGAAAAATAGAAGCTGGTCAAG
TCCAAATACCCCTTTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGGTAA
mRNA sequenceShow/hide mRNA sequence
GACAATCATGCTCTTACCATCCCTCAACTTCTTCCTTCTTTCCCCACTTATTGAGACATACTTTTCCCCAACCTTCTTTGTCAACTACCATCATTCATTCCCCTTTTTCA
GTGCCAAACTAACTGAAAATAATGGCGTCAAGCTCTGTCACGTCGACACATGGCTTTTACTCATCCTGGACCAAAAAGGAAAACAAGAAATTTGAGGAGGCATTGGCCTT
CTTTGACGAGGACACACCAGACCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACCGCTGAGGAAGCAAGAAGGCTTTATGAGTTACTAGTACGAGATGTCA
GAAAAATAGAAGCTGGTCAAGTCCAAATACCCCTTTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGGTAATATCCAACTTGCTGAACATTTCCT
CTCCGACGAAGTCACTCCAAACCCTGTGTCCTATCCTAAGTAATCTTCTCCTTTCTACTAGTACATTAGAATAAATGTCCATCACAAGAAACTTATGTCCTATAATTCCT
ATAGAAATATATTGAGCAGATTTTATAGCGTAGCCCGTTGTTAAATTATGGTTTAGTATGCAGAAATGTATTAACAGACTACTGACTTTTCATTTCAACAATCTATATAA
CATGGC
Protein sequenceShow/hide protein sequence
MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR