; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G42880 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G42880
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE2
Genome locationChr3:36817389..36817862
RNA-Seq ExpressionCSPI03G42880
SyntenyCSPI03G42880
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651330.1 hypothetical protein Csa_000958, partial [Cucumis sativus]2.5e-1698.04Show/hide
Query:  MADSDKIDMELPSISFEGVGEVTIDSKVNEAQLTDEVTDDTNVNEAQLVDE
        MADSDKIDMELPSISFEGVGEVTIDSKVNEAQLTDEVT+DTNVNEAQLVDE
Subjt:  MADSDKIDMELPSISFEGVGEVTIDSKVNEAQLTDEVTDDTNVNEAQLVDE

RVW87559.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]8.2e-1551.81Show/hide
Query:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW
        HT++ +SPS  + SP +   PSS P+PIAHY++CD F+V  + FLA + +S +P S K AMKDV W+ +M  +IRALE+NGTW
Subjt:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW

RVW91392.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]2.8e-1551.81Show/hide
Query:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW
        HT++ +SPSL + SP +   PS  P+PIAHY++CD F+V  + FLA + +S +P S K AMKDV W+ +M  +IRALE+NGTW
Subjt:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW

RVW97398.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.1e-1450.6Show/hide
Query:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW
        HT++ +SPS  + SP +   PS  P+PIAHY++CD F++  Q FLA + +S +P S K AMKDV W+ +M  +IRALE+NGTW
Subjt:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW

XP_015890388.2 uncharacterized protein LOC107424986 [Ziziphus jujuba]1.4e-1450.6Show/hide
Query:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW
        HT++ +SPS  + SP +   PS  P+PIAHY++CD F+V  + FLA + +S +P S K AMKDV W+ +MQ +IRAL++NGTW
Subjt:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW

TrEMBL top hitse value%identityAlignment
A0A438CEK1 Retrovirus-related Pol polyprotein from transposon RE28.8e-1550.6Show/hide
Query:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW
        HT++ +SPS  + SP +   PS  P+PIAHY++CD F+V  + FLA + +S +P S K AMKDV W+ +M  +IRALE+NGTW
Subjt:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW

A0A438HSZ1 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-1551.81Show/hide
Query:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW
        HT++ +SPS  + SP +   PSS P+PIAHY++CD F+V  + FLA + +S +P S K AMKDV W+ +M  +IRALE+NGTW
Subjt:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW

A0A438I3W7 Retrovirus-related Pol polyprotein from transposon RE21.4e-1551.81Show/hide
Query:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW
        HT++ +SPSL + SP +   PS  P+PIAHY++CD F+V  + FLA + +S +P S K AMKDV W+ +M  +IRALE+NGTW
Subjt:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW

A0A438IL03 Retrovirus-related Pol polyprotein from transposon TNT 1-945.2e-1550.6Show/hide
Query:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW
        HT++ +SPS  + SP +   PS  P+PIAHY++CD F++  Q FLA + +S +P S K AMKDV W+ +M  +IRALE+NGTW
Subjt:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW

A0A6P4ANF7 uncharacterized protein LOC1074249866.8e-1550.6Show/hide
Query:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW
        HT++ +SPS  + SP +   PS  P+PIAHY++CD F+V  + FLA + +S +P S K AMKDV W+ +MQ +IRAL++NGTW
Subjt:  HTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVFLAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGACAGTGACAAAATAGATATGGAACTTCCTTCCATATCTTTCGAGGGGGTTGGTGAGGTTACTATTGATAGTAAAGTTAATGAGGCACAATTGACTGATGAGGT
TACTGATGATACTAATGTTAACGAGGCACAGTTGGTTGATGAGGTTCTTGTTAAAACTAATGTTAAATTTAAAATTGCAAGATTATTGCATACAATTATCAAGAAAAGTC
CATCTCTCACTTCACTCTCACCACATAATTATCACGCTCCCTCGAGTATGCCTTTTCCTATAGCACATTATGTTAGTTGTGACAAATTTACAGTACAAGACCAAGTTTTC
CTTGCACATTTATCTACAAGTGTTGAACCATTATCCTCAAAAAATGCTATGAAGGATGTTAGATGGCGTACTGCAATGCAAACAAAAATTCGTGCTTTAGAAGATAACGG
CACTTGGGGCCACGAAAAAAATTTCTTATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGACAGTGACAAAATAGATATGGAACTTCCTTCCATATCTTTCGAGGGGGTTGGTGAGGTTACTATTGATAGTAAAGTTAATGAGGCACAATTGACTGATGAGGT
TACTGATGATACTAATGTTAACGAGGCACAGTTGGTTGATGAGGTTCTTGTTAAAACTAATGTTAAATTTAAAATTGCAAGATTATTGCATACAATTATCAAGAAAAGTC
CATCTCTCACTTCACTCTCACCACATAATTATCACGCTCCCTCGAGTATGCCTTTTCCTATAGCACATTATGTTAGTTGTGACAAATTTACAGTACAAGACCAAGTTTTC
CTTGCACATTTATCTACAAGTGTTGAACCATTATCCTCAAAAAATGCTATGAAGGATGTTAGATGGCGTACTGCAATGCAAACAAAAATTCGTGCTTTAGAAGATAACGG
CACTTGGGGCCACGAAAAAAATTTCTTATGGTAA
Protein sequenceShow/hide protein sequence
MADSDKIDMELPSISFEGVGEVTIDSKVNEAQLTDEVTDDTNVNEAQLVDEVLVKTNVKFKIARLLHTIIKKSPSLTSLSPHNYHAPSSMPFPIAHYVSCDKFTVQDQVF
LAHLSTSVEPLSSKNAMKDVRWRTAMQTKIRALEDNGTWGHEKNFLW