CuGenDBv2

Gene ID	CSPI03G43210
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Mitochondrial
Genome location	Chr3:37132963..37135393
RNA-Seq Expression	CSPI03G43210
Synteny	CSPI03G43210
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004147839.1 uncharacterized protein LOC101217531 [Cucumis sativus]

9.1e-65

100

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAEDKQ
        AWPVIIPDEELKQPFTGIKPRKAEDKQ
Subjt:  AWPVIIPDEELKQPFTGIKPRKAEDKQ

XP_008466507.1 PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo]

3.4e-59

93.6

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAED
        AWPVIIP+EELKQP T IKPRKAED
Subjt:  AWPVIIPDEELKQPFTGIKPRKAED

XP_022139291.1 uncharacterized protein LOC111010210 [Momordica charantia]

6.3e-58

90.55

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAEDKQ
         WP++IP+EEL+QP   IKPRKAEDKQ
Subjt:  AWPVIIPDEELKQPFTGIKPRKAEDKQ

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

2.8e-58

92.13

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL  CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAEDKQ
         WPVIIPDEEL QP   IKPRKAEDKQ
Subjt:  AWPVIIPDEELKQPFTGIKPRKAEDKQ

XP_038896893.1 uncharacterized protein LOC120085105 [Benincasa hispida]

4.7e-61

95.28

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAEDKQ
         WPVIIPDEELKQP +GIKPRKAEDKQ
Subjt:  AWPVIIPDEELKQPFTGIKPRKAEDKQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGG5 Uncharacterized protein

4.4e-65

100

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAEDKQ
        AWPVIIPDEELKQPFTGIKPRKAEDKQ
Subjt:  AWPVIIPDEELKQPFTGIKPRKAEDKQ

A0A1S3CRE8 uncharacterized protein LOC103503897

1.6e-59

93.6

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAED
        AWPVIIP+EELKQP T IKPRKAED
Subjt:  AWPVIIPDEELKQPFTGIKPRKAED

A0A6J1CC86 uncharacterized protein LOC111010210

3.1e-58

90.55

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAEDKQ
         WP++IP+EEL+QP   IKPRKAEDKQ
Subjt:  AWPVIIPDEELKQPFTGIKPRKAEDKQ

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

1.4e-58

92.13

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL  CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAEDKQ
         WPVIIPDEEL QP   IKPRKAEDKQ
Subjt:  AWPVIIPDEELKQPFTGIKPRKAEDKQ

A0A6J1IZE5 uncharacterized protein LOC111481279

4.0e-58

92.13

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIR+ ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAEDKQ
         WPVIIPDEEL  P   IKPRKAEDKQ
Subjt:  AWPVIIPDEELKQPFTGIKPRKAEDKQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

5.9e-54

79.53

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFN LDPRLA C+EFLAQCNA KAKESNP CQ++VKRRTD+ PPQI VTFVNGVEE FDA +T AQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKPRKAEDKQ
         WPVIIPDEEL Q   G+KPRKAEDK+
Subjt:  AWPVIIPDEELKQPFTGIKPRKAEDKQ

Sequences

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CDS sequence

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ATGTTGAAGTTCCTATCTAAGGTGAAGATCGAATTCAATGCTCTCGATCCACGCTTAGCGTGTTGTATGGAATTCTTGGCGCAGTGTAATGCTTCCAAGGCTAAGGAATC
CAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACAGACGACCACCCTCCCCAGATCGCCGTCACCTTTGTCAATGGGGTCGAAGAGGTTTTTGACGCTACCTCTACTC
CTGCTCAAACAATTAGGAGTATGATTCTTGAAAAGGGTCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCGGGGGAAGCTTGGCCAGTTATCATTCCCGATGAGGAG
CTCAAACAACCCTTTACCGGTATCAAGCCTAGAAAAGCGGAAGACAAGCAGTAA

mRNA sequence

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ATTTCACACAGAAAAAGCCCAAACCCCAACAACCTAGGCTTAGTCGTCCTCTTCTCGAAGCGAGCCTCAATCACTGTTGTTCGAAGGTTTAGGCGAAGGGAATAAGCAGC
AATGTTGAAGTTCCTATCTAAGGTGAAGATCGAATTCAATGCTCTCGATCCACGCTTAGCGTGTTGTATGGAATTCTTGGCGCAGTGTAATGCTTCCAAGGCTAAGGAAT
CCAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACAGACGACCACCCTCCCCAGATCGCCGTCACCTTTGTCAATGGGGTCGAAGAGGTTTTTGACGCTACCTCTACT
CCTGCTCAAACAATTAGGAGTATGATTCTTGAAAAGGGTCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCGGGGGAAGCTTGGCCAGTTATCATTCCCGATGAGGA
GCTCAAACAACCCTTTACCGGTATCAAGCCTAGAAAAGCGGAAGACAAGCAGTAACTTTGTCACAGTTGATGAAATTGCGGATAGATTGGAAAGAGGGGTGGCATCTACA
CTCGTAATCTTAGGCTGTCAAATATAGAATCAGTTTCCATGGTTAGGAACAATAGCGCTGATTCTGAGATGTTTTCTGTTTTAAATTTCGTAGGGATGCTTCCAAATCTT
CACTTAGAATTCCACATCGGGTTCTAGATATGACATGTGGATGCTCTGTTGGTTTTCATAAGCCATTTATTTATGGGAACTCGTTACCAATACACCCGATTCTCGACTTT
CTTTTGACTTTTAGTGAAGAAATGTGCAACTAATCTTTAAAAAAGAAACGATCGGTTAAATGAGTTAAATGTTTGTTTGGCTTATTTCGATATCAAATTTATCAACAATT
TCGTGACACTTGAAAAATGTCGAATAGAAACCTGAGTAACTTTAACAGATTGAT

Protein sequence

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MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEE
LKQPFTGIKPRKAEDKQ

CSPI03G43210 (gene) of Cucumber (PI 183967) v1 genome