CuGenDBv2

Gene ID	CSPI03G43580
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	la-related protein 1C-like
Genome location	Chr3:37432154..37433152
RNA-Seq Expression	CSPI03G43580
Synteny	CSPI03G43580
Gene Ontology terms	GO:0003723 - RNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0063306.1 la-related protein 1C-like [Cucumis melo var. makuwa]

4.7e-98

94.98

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Query:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A
        MGKATDFSSNHRSPSGTS  GDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCD NDGN  A
Subjt:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A

Query:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV
        ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARAS KLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN VV R RSSRRGGGGGGSSV
Subjt:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV

Query:  GGP-RGGYYRPPPPPPPPP
        GGP RGG+YRPPPPPPPPP
Subjt:  GGP-RGGYYRPPPPPPPPP

XP_004136486.1 la-related protein 1C [Cucumis sativus]

7.3e-107

99.53

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Query:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAAS
        MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAAS
Subjt:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAAS

Query:  KKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGGGSSVGGP
        KKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN VVARRSSRRGGGGGGSSVGGP
Subjt:  KKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGGGSSVGGP

Query:  RGGYYRPPPPPPPPP
        RGGYYRPPPPPPPPP
Subjt:  RGGYYRPPPPPPPPP

XP_008466467.1 PREDICTED: la-related protein 1C-like [Cucumis melo]

3.3e-99

94.98

Show/hide

Query:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A
        MGKATDFSSN RSPSGTS  GDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCD NDGN  A
Subjt:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A

Query:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV
        ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN VV R RSSRRGGGGGGSSV
Subjt:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV

Query:  GGP-RGGYYRPPPPPPPPP
        GGP RGG+YRPPPPPPPPP
Subjt:  GGP-RGGYYRPPPPPPPPP

XP_038897929.1 la-related protein 1C-like isoform X1 [Benincasa hispida]

5.6e-91

88.53

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Query:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A
        MGKATD+SSNHRSPSGT L+GDN NSSEFRRKNLQSPWAQ+VRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSD FTSSEN DANDGN  A
Subjt:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A

Query:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV
         SKKQAWNKPTNGVVEGG VMGADSWPALAESARASPKL VDSPPKVT+EV+VP SQG INVPPQRQATNNAKSN +LK+ VVAR R SRRGGGGGGSSV
Subjt:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV

Query:  GGPRGGYYRPPPPPPPPP
        GGP  G+YRPPPPPPPPP
Subjt:  GGPRGGYYRPPPPPPPPP

XP_038897930.1 la-related protein 1C-like isoform X2 [Benincasa hispida]

5.6e-91

88.53

Show/hide

Query:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A
        MGKATD+SSNHRSPSGT L+GDN NSSEFRRKNLQSPWAQ+VRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSD FTSSEN DANDGN  A
Subjt:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A

Query:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV
         SKKQAWNKPTNGVVEGG VMGADSWPALAESARASPKL VDSPPKVT+EV+VP SQG INVPPQRQATNNAKSN +LK+ VVAR R SRRGGGGGGSSV
Subjt:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV

Query:  GGPRGGYYRPPPPPPPPP
        GGP  G+YRPPPPPPPPP
Subjt:  GGPRGGYYRPPPPPPPPP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LH68 HTH La-type RNA-binding domain-containing protein

3.5e-107

99.53

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Query:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAAS
        MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAAS
Subjt:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAAS

Query:  KKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGGGSSVGGP
        KKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN VVARRSSRRGGGGGGSSVGGP
Subjt:  KKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGGGSSVGGP

Query:  RGGYYRPPPPPPPPP
        RGGYYRPPPPPPPPP
Subjt:  RGGYYRPPPPPPPPP

A0A1S3CRB5 la-related protein 1C-like

1.6e-99

94.98

Show/hide

Query:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A
        MGKATDFSSN RSPSGTS  GDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCD NDGN  A
Subjt:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A

Query:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV
        ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN VV R RSSRRGGGGGGSSV
Subjt:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV

Query:  GGP-RGGYYRPPPPPPPPP
        GGP RGG+YRPPPPPPPPP
Subjt:  GGP-RGGYYRPPPPPPPPP

A0A5A7VA44 La-related protein 1C-like

2.3e-98

94.98

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Query:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A
        MGKATDFSSNHRSPSGTS  GDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCD NDGN  A
Subjt:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A

Query:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV
        ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARAS KLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN VV R RSSRRGGGGGGSSV
Subjt:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV

Query:  GGP-RGGYYRPPPPPPPPP
        GGP RGG+YRPPPPPPPPP
Subjt:  GGP-RGGYYRPPPPPPPPP

A0A5D3E7C8 La-related protein 1C-like

1.6e-99

94.98

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Query:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A
        MGKATDFSSN RSPSGTS  GDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCD NDGN  A
Subjt:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--A

Query:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV
        ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN VV R RSSRRGGGGGGSSV
Subjt:  ASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSV

Query:  GGP-RGGYYRPPPPPPPPP
        GGP RGG+YRPPPPPPPPP
Subjt:  GGP-RGGYYRPPPPPPPPP

A0A6J1BZT7 la-related protein 1C-like

2.8e-72

73.85

Show/hide

Query:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDG---N
        M  ATD+SSNHRSP GT   GDN NS E RR+NL+SPWAQVVRGEPESISPVDQS L SSSSSLSSLA SATETP+ ASPP+DNFTSSEN DA+DG    
Subjt:  MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDG---N

Query:  AASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGGGSSV
        A ++K AWNKP+NGVV+ G VMGADSWPAL++SARASPKL VDSP K T+EV+VPPSQG INV PQRQATNNAKSNP+ K+ V AR+ S + GGGGG+SV
Subjt:  AASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGGGSSV

Query:  GGP-RGGYYRPPPPPPPP
        GGP RG ++R PPPPPPP
Subjt:  GGP-RGGYYRPPPPPPPP

SwissProt top hits

e value

%identity

Alignment

Q94K80 La-related protein 1C

1.3e-05

31.86

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Query:  SSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSS---LSSLAVSATETPAPASPPSDNFTSSENCDANDG-NAASKKQ
        S NH SP+ +        S     + + SPW Q+VRGE E I+        SS  S   +  +A  +   P  A    +     E  +A+ G + A KK 
Subjt:  SSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSS---LSSLAVSATETPAPASPPSDNFTSSENCDANDG-NAASKKQ

Query:  AWNKPTNGVVEGGSVMGADSWPALAESARA--------SPKLTVDSPPKVTVEVAVPPSQGPIN--VPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGG
         W +P+NG  E G VMGA SWPAL+E+ +A        S K   D P   +   +VP +QG  N  VP  +QA   A  NPT  ++   +RS ++  G  
Subjt:  AWNKPTNGVVEGGSVMGADSWPALAESARA--------SPKLTVDSPPKVTVEVAVPPSQGPIN--VPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGG

Query:  GSSVG-----GPRGGYYRPPPPPPPP
        GS+ G       +G +   P   P P
Subjt:  GSSVG-----GPRGGYYRPPPPPPPP

Arabidopsis top hits

e value

%identity

Alignment

AT4G35890.1 winged-helix DNA-binding transcription factor family protein

9.1e-07

31.86

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Query:  SSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSS---LSSLAVSATETPAPASPPSDNFTSSENCDANDG-NAASKKQ
        S NH SP+ +        S     + + SPW Q+VRGE E I+        SS  S   +  +A  +   P  A    +     E  +A+ G + A KK 
Subjt:  SSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSS---LSSLAVSATETPAPASPPSDNFTSSENCDANDG-NAASKKQ

Query:  AWNKPTNGVVEGGSVMGADSWPALAESARA--------SPKLTVDSPPKVTVEVAVPPSQGPIN--VPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGG
         W +P+NG  E G VMGA SWPAL+E+ +A        S K   D P   +   +VP +QG  N  VP  +QA   A  NPT  ++   +RS ++  G  
Subjt:  AWNKPTNGVVEGGSVMGADSWPALAESARA--------SPKLTVDSPPKVTVEVAVPPSQGPIN--VPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGG

Query:  GSSVG-----GPRGGYYRPPPPPPPP
        GS+ G       +G +   P   P P
Subjt:  GSSVG-----GPRGGYYRPPPPPPPP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGAAGGCTACCGATTTTTCGTCTAATCATCGTTCGCCAAGTGGAACTAGTCTTGCCGGCGATAATACCAACAGCTCTGAGTTCCGGAGGAAGAATCTTCAGTCTCC
GTGGGCTCAAGTCGTCCGTGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCCTCTTCGTCATCCTTGTCTTCGCTTGCGGTTTCCGCTACAGAAA
CCCCTGCTCCTGCCTCCCCGCCGTCGGATAACTTTACGTCTTCCGAGAACTGCGACGCGAATGACGGTAATGCAGCGTCGAAGAAACAGGCTTGGAACAAGCCTACGAAT
GGCGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAATTAACAGTTGATTCTCCTCCGAAGGTTACCGT
CGAAGTAGCAGTCCCTCCTTCTCAGGGACCTATCAATGTACCTCCTCAGCGACAAGCTACAAATAATGCCAAATCGAACCCGACTCTGAAGAATGCAGTGGTTGCTCGGC
GATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTCGAGGCGGCTATTATCGCCCTCCGCCACCTCCACCACCACCTCCCTAG

mRNA sequence

Show/hide mRNA sequence

TCGTTTCTGGAGACTGTGGTTTGATTGGAATGGGGAAGGCTACCGATTTTTCGTCTAATCATCGTTCGCCAAGTGGAACTAGTCTTGCCGGCGATAATACCAACAGCTCT
GAGTTCCGGAGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGTGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCCTCTTCGTCATCCTT
GTCTTCGCTTGCGGTTTCCGCTACAGAAACCCCTGCTCCTGCCTCCCCGCCGTCGGATAACTTTACGTCTTCCGAGAACTGCGACGCGAATGACGGTAATGCAGCGTCGA
AGAAACAGGCTTGGAACAAGCCTACGAATGGCGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAATTA
ACAGTTGATTCTCCTCCGAAGGTTACCGTCGAAGTAGCAGTCCCTCCTTCTCAGGGACCTATCAATGTACCTCCTCAGCGACAAGCTACAAATAATGCCAAATCGAACCC
GACTCTGAAGAATGCAGTGGTTGCTCGGCGATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTCGAGGCGGCTATTATCGCCCTCCGCCACCTC
CACCACCACCTCCCTAG

Protein sequence

Show/hide protein sequence

MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAASKKQAWNKPTN
GVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAVVARRSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP

CSPI03G43580 (gene) of Cucumber (PI 183967) v1 genome