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CSPI03G43870 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G43870
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 6A-like
Genome locationChr3:37640067..37645123
RNA-Seq ExpressionCSPI03G43870
SyntenyCSPI03G43870
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0015031 - protein transport (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0005768 - endosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0035091 - phosphatidylinositol binding (molecular function)
InterPro domainsIPR006110 - RNA polymerase, subunit omega/K/RPB6
IPR006111 - Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit
IPR012293 - RNA polymerase subunit, RPB6/omega
IPR020708 - DNA-directed RNA polymerase, 14-18kDa subunit, conserved site
IPR028363 - DNA-directed RNA polymerase, subunit RPB6
IPR036161 - RPB6/omega subunit-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038819.1 PX domain-containing protein [Cucumis melo var. makuwa]1.6e-7098.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTN DDVPGEPVEAE KEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

TYK31441.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo var. makuwa]1.6e-7098.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTN DDVPGEPVEAE KEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_004136357.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus]5.0e-72100Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_008466421.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo]1.6e-7098.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTN DDVPGEPVEAE KEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_038878213.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Benincasa hispida]1.5e-6895.77Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MAD+DYNDLDMGYEDEPPEPEIEEGAEEELD N DDVPGEP EAE KEDEEPVER RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

TrEMBL top hitse value%identityAlignment
A0A0A0LGM1 Uncharacterized protein2.4e-72100Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A1S3CRD6 DNA-directed RNA polymerases II, IV and V subunit 6A-like7.9e-7198.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTN DDVPGEPVEAE KEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A5A7TBT6 PX domain-containing protein7.9e-7198.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTN DDVPGEPVEAE KEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A5D3E797 DNA-directed RNA polymerases II, IV and V subunit 6A-like7.9e-7198.59Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
        MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTN DDVPGEPVEAE KEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM

Query:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  KELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A6J1J2R7 DNA-directed RNA polymerases II, IV and V subunit 6A-like2.8e-6895.8Show/hide
Query:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELD-TNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA
        MADDDYNDLDMGY+DEPPEPE+EEGAEEELD  N DDVPGEPVEAE KEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA
Subjt:  MADDDYNDLDMGYEDEPPEPEIEEGAEEELD-TNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA

Query:  MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

SwissProt top hitse value%identityAlignment
O88828 DNA-directed RNA polymerases I, II, and III subunit RPABC25.5e-2961.07Show/hide
Query:  DDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVP-GEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE
        DD++D++   EDE  +    E AEEE   N + +P GE  +A  K         R T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKE
Subjt:  DDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVP-GEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE

Query:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED
        L+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED

P61219 DNA-directed RNA polymerases I, II, and III subunit RPABC25.5e-2961.07Show/hide
Query:  DDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVP-GEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE
        DD++D++   EDE  +    E AEEE   N + +P GE  +A  K         R T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKE
Subjt:  DDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVP-GEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE

Query:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED
        L+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED

Q32PE0 DNA-directed RNA polymerases I, II, and III subunit RPABC25.5e-2961.07Show/hide
Query:  DDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVP-GEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE
        DD++D++   EDE  +    E AEEE   N + +P GE  +A  K         R T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKE
Subjt:  DDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVP-GEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE

Query:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED
        L+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  LRERKIPFTIRRYLPDGSYEDWGVDELIVED

Q9FJ98 DNA-directed RNA polymerases II, IV and V subunit 6A1.3e-5983.22Show/hide
Query:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
        MAD+DYND+ D+GYEDEP EPEIEEG EE+++    DDV GEP+EAE K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
Subjt:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI

Query:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        AMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGG
Subjt:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

Q9SJ96 DNA-directed RNA polymerases II and V subunit 6B3.6e-5781.82Show/hide
Query:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
        MADDDYN++ D+GYEDEP EPEIEEG EE+ D    DDV  +P+E E K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
Subjt:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI

Query:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        AMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGG
Subjt:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

Arabidopsis top hitse value%identityAlignment
AT2G04630.1 RNA polymerase Rpb62.6e-5881.82Show/hide
Query:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
        MADDDYN++ D+GYEDEP EPEIEEG EE+ D    DDV  +P+E E K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
Subjt:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI

Query:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        AMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGG
Subjt:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

AT5G51940.1 RNA polymerase Rpb69.5e-6183.22Show/hide
Query:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
        MAD+DYND+ D+GYEDEP EPEIEEG EE+++    DDV GEP+EAE K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI
Subjt:  MADDDYNDL-DMGYEDEPPEPEIEEGAEEELD-TNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEI

Query:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        AMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGG
Subjt:  AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACGACGATTACAATGACCTTGACATGGGATATGAGGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATACTAACACTGATGATGT
TCCTGGTGAACCCGTTGAAGCAGAGGGAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACTAAGTATGAACGTGCTAGAATTTTGGGTA
CACGCGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTC
ACCATCCGTCGCTACTTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTGATTGTGGAGGACTCTTGGAAGAGGCAAGTTGGTGGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
AATAAATGAGTTCTGAATAGAAGTTCTAAACCCTAAAATCCTAAAACCCTTTCCTCTCTCTTTCTCCTTCGTCAAACCCGATTCCTCTCTCCCCAACTGTGACTCTATTT
GTCCTTCGGTTTAGACTCACCATTTTCGAAAATATTACTTCAAAGGGTTTTGAATCCCAGTCGAGACCGAGGGGTTTCCACAGACCAACAGTCTTCTCTATCCATCATCA
ATGGCGGACGACGATTACAATGACCTTGACATGGGATATGAGGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATACTAACACTGATGATGT
TCCTGGTGAACCCGTTGAAGCAGAGGGAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACTAAGTATGAACGTGCTAGAATTTTGGGTA
CACGCGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTC
ACCATCCGTCGCTACTTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTGATTGTGGAGGACTCTTGGAAGAGGCAAGTTGGTGGTGCTTGAATTTTGATGTT
TTTGTGAGATAATATATAGCTTTTCTGTCAATTGCATAGCCGATTTGTTCGCTCCTTTAATCAACTTGTGAATGTTGTGGTTGTTGCATAACTTATCTATAATATTGGAA
TGAAATCACTTTTGAGAAACAGACATTTCTTGTTTGTTTATAACTACACATGCCATTAACACTTGAATAA
Protein sequenceShow/hide protein sequence
MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTNTDDVPGEPVEAEGKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF
TIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA