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CSPI03G43990 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G43990
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCoatomer subunit zeta
Genome locationChr3:37737554..37741109
RNA-Seq ExpressionCSPI03G43990
SyntenyCSPI03G43990
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0006891 - intra-Golgi vesicle-mediated transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0030126 - COPI vesicle coat (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR022775 - AP complex, mu/sigma subunit
IPR039652 - Coatomer subunit zeta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038809.1 SNARE-like superfamily protein [Cucumis melo var. makuwa]1.3e-7597.96Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYT LGD+AVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_004136347.1 TSET complex member tstD [Cucumis sativus]1.6e-76100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_008466411.1 PREDICTED: uncharacterized protein LOC103503824 [Cucumis melo]1.0e-7598.64Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYT LGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_022936551.1 uncharacterized protein LOC111443125 [Cucurbita moschata]6.6e-7597.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYT LGDVAVYVVGKDEYDELALAEVIFV+TS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTER FLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_038896955.1 TSET complex member tstD [Benincasa hispida]2.3e-7597.96Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYT LGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        +PTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

TrEMBL top hitse value%identityAlignment
A0A0A0LHA5 Coatomer subunit zeta7.6e-77100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A1S3CRC6 Coatomer subunit zeta4.9e-7698.64Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYT LGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A5A7TBS4 Coatomer subunit zeta6.4e-7697.96Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYT LGD+AVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A5D3E691 Coatomer subunit zeta4.9e-7698.64Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYT LGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A6J1IMX0 Coatomer subunit zeta3.2e-7597.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYT LGDVAVYVVGKDEYDELALAEVIFV+TS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTER FLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

SwissProt top hitse value%identityAlignment
C0HLF1 TSET complex member tstD2.7e-1531.94Show/hide
Query:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDAC-
        M+ ++LI N+ GNI+  +++  +  E++  +   L +   D    +KNE+  V        V+T +GD+ +++ G +E DELAL++V F I  ++KD C 
Subjt:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDAC-

Query:  GKAPTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLK
         K  TE+ F+++  K  L LDEI+  G L+  + + I+    LK
Subjt:  GKAPTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLK

Q54CA7 Probable coatomer subunit zeta-B4.8e-0428.78Show/hide
Query:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKD-EYDELALAEVIFVITSAIKDACGK
        A+++ ++ G  L   F+  P      L  +    KL  +  K   N EL +  +K   ++ +   DV ++VVG     +ELAL +V+  + S  K AC  
Subjt:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKD-EYDELALAEVIFVITSAIKDACGK

Query:  AP----TERLFLDKYGKICLCLDEIVWTGILENTEKDRI
              T++ FL+ Y  I L +DEIV  GI+   +++ I
Subjt:  AP----TERLFLDKYGKICLCLDEIVWTGILENTEKDRI

Q5NA06 Coatomer subunit zeta-31.5e-0526.72Show/hide
Query:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTE
        +L+ +S G  +  +++          ++F   + A   K +   E  +    S ++VY  + D+  +V G DE +EL LA V+   + AI          
Subjt:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTE

Query:  RLFLDKYGKICLCLDEIVWTGILENTEKDRI
        R  L+    I LCLDE+V  GI+  T+   I
Subjt:  RLFLDKYGKICLCLDEIVWTGILENTEKDRI

Arabidopsis top hitse value%identityAlignment
AT1G15370.1 SNARE-like superfamily protein1.5e-6982.19Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK
        M+LAVL ANSVGN+L+ERF+GVPAEERLHWRSFLVKLGADNLKG KNEEL VA HKSVYIVYT LGDV++++VGKDEYDELALAE I++IT+A+KD CGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNE
         PTER+FLDKYG+ICLCLDEIVW G+LENT+KDRIKRLIRLKPP+E
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTGGCTGTGCTGATCGCCAACTCCGTCGGCAACATTCTCGTTGAACGGTTTCATGGAGTTCCGGCAGAGGAGCGATTGCATTGGCGATCATTTTTAGTGAAGCT
GGGAGCTGATAATCTCAAAGGTGCGAAAAATGAAGAGCTATTTGTTGCTTCACACAAGTCTGTATATATTGTTTACACTGCTCTTGGCGATGTTGCAGTTTATGTTGTTG
GGAAGGACGAATATGATGAATTGGCTTTGGCAGAAGTGATCTTTGTAATAACATCAGCGATAAAGGATGCCTGTGGGAAAGCTCCAACTGAGCGCTTGTTTCTCGACAAA
TATGGAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGACGGGCATCTTGGAAAACACGGAGAAAGACAGGATCAAGAGGCTGATAAGGTTAAAACCTCCCAATGAGTT
TTGA
mRNA sequenceShow/hide mRNA sequence
TGGAATTATATTGAGTTGATGTGTAGAGCTATTGTAATTCACAAATATGGTTCCATTATCTCTGTTTCCAAACAATCCCTAATTGGTGCCTTAAAGAACAAAAACGAAAA
ACAGGTGCGAGAGAAAATCTGGGAATCTAATATTCATTTCGAAGCTTCGAATTTTCCCATCCGAAATTCCGATCGGAGAGTTGAAATCTGACTGCGAGAGATCACCCATG
TTGCTGGCTGTGCTGATCGCCAACTCCGTCGGCAACATTCTCGTTGAACGGTTTCATGGAGTTCCGGCAGAGGAGCGATTGCATTGGCGATCATTTTTAGTGAAGCTGGG
AGCTGATAATCTCAAAGGTGCGAAAAATGAAGAGCTATTTGTTGCTTCACACAAGTCTGTATATATTGTTTACACTGCTCTTGGCGATGTTGCAGTTTATGTTGTTGGGA
AGGACGAATATGATGAATTGGCTTTGGCAGAAGTGATCTTTGTAATAACATCAGCGATAAAGGATGCCTGTGGGAAAGCTCCAACTGAGCGCTTGTTTCTCGACAAATAT
GGAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGACGGGCATCTTGGAAAACACGGAGAAAGACAGGATCAAGAGGCTGATAAGGTTAAAACCTCCCAATGAGTTTTG
ATCAATGAAACGGATGCACACTATCTTGTTGGTTGCTGCTTTCAACTATTTTACTCAACTTATGCCAAAGAATTGTTTCAAGCACTGTGGAATTTCCATCGTGATCGATA
AGTTTACTTTACTTACCTATTCTATTTGGCTCTCATACCTGAACTTTATCGGACCCATTCAGTTTGTAAGTTAGAACTTGAAGATGTGTAAAGAATTGAAGATTTGATCA
AGATTTTCATACTGGGAACAAACTAGTTTATTGAGTCATTTTGAAATAGTTAAAATCACTTTTGTTATATTTAAATATACGTTTTTAATCCCTCAAAATTAGTTTAGGGT
TTGATTAGCCACACATGCCCTACATTCGTATATTGCAGTGGAATCGTGGAGTAAATTTGTAGTATTCTATCAATTTGCTTCACAACTAACTGTGGTTGGATAAGATGGTT
GATGCGTATGAGCTCATCCGTCCTAGTGGCCCTTTGAACATTAGTAATACGGCTTTGAAGGAGATGAGTTCTAATTACAGCGATCTTTCTGTTTA
Protein sequenceShow/hide protein sequence
MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDK
YGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF