CuGenDBv2

Gene ID	CSPI03G45940
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome location	Chr3:39325607..39328805
RNA-Seq Expression	CSPI03G45940
Synteny	CSPI03G45940
Gene Ontology terms	GO:0006450 - regulation of translational fidelity (biological process) GO:0032543 - mitochondrial translation (biological process) GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domains	IPR003837 - Glu-tRNAGln amidotransferase C subunit IPR036113 - Glu-tRNAGln amidotransferase superfamily, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136231.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis sativus]

1.1e-71

99.31

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_008466091.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo]

8.2e-70

95.86

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ ASLQPPDVPRLAQTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRND+PETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_022143239.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia]

7.2e-58

82.99

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Query:  MGSKALPLLKGASSFPSLKRQIFISTA--FHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+RQIFI     FH+LP+S+  IR  ST   I ASLQPPDVPRLA+TARISLTPT+ EEFAPKI QVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTA--FHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        PSIRADTEGGNQRNDI ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_023521629.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]

2.7e-57

82.76

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        M S AL LLKGASS PSL  QIFIST+ +SLPVSNI IR  STA GI ASLQPPDVPRLA+TARISL P++ EEFAPKI QVVDWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQR+D+ ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_038897282.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida]

4.8e-62

88.97

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASS PSLK +IFIST  HSLP S I IR  STAS I ASLQPPDVPRLA+TARISLTPTQ EEFAPKI QVVDWFGQLQTVDLQSIEP+
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJU5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

5.6e-72

99.31

Show/hide

Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A1S3CQE8 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.0e-70

95.86

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ ASLQPPDVPRLAQTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRND+PETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.0e-70

95.86

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ ASLQPPDVPRLAQTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRND+PETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A6J1CQ90 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.5e-58

82.99

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Query:  MGSKALPLLKGASSFPSLKRQIFISTA--FHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+RQIFI     FH+LP+S+  IR  ST   I ASLQPPDVPRLA+TARISLTPT+ EEFAPKI QVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTA--FHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        PSIRADTEGGNQRNDI ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A6J1FM33 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.3e-57

82.76

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGS AL LLKGASS PSL  QIFIST+ +SLPVS+I IR  STA GI ASLQPPDVPRLA+TARISL P + EEFAPKI QVVDWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQR+D+ ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

SwissProt top hits

e value

%identity

Alignment

A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.2e-33

66.04

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Query:  SSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDIPETFENREAMIGAVPVFDEPYIKVP
        ++ A+  S +L+PPD+PRLA  ARISL+P +AEEFAPKI QVVDWFGQLQ VDL+S+EPS+RA T  GN  R D PETF NR+A+I +VP +D+PYIKVP
Subjt:  SSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDIPETFENREAMIGAVPVFDEPYIKVP

Query:  KVLNKE
        +VLNKE
Subjt:  KVLNKE

B9INH0 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.4e-35

58.62

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGS+A+ LLKG S  P     +F+       P  +I  R ++ A+   +SL+PPDV RLA+TARISLTP Q EEF PKI QV+DW   L +VDL S+EPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEG N R+D PETFENREA+I AVP +++PY+KVPKVLNKE
Subjt:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

9.5e-37

58.9

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSN-ISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEP
        MGS+AL LLK A     LK QI         P S  ++ R  S  +   +SLQPPDV RLA+TARISL   + EEFAPKI QV+DWFGQLQ VDL S+EP
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSN-ISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        +IRAD+EG N R+D+PETF  REA+I AVP +++PY+KVPKVLNKE
Subjt:  SIRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.1e-40

61.38

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGS+AL LLK  ++    +  +F S +      S   IRNS+ +    ++L PPD+PRLA+TARISLTP + EEFAPKI QV+DWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEG N R+D PETFENREA+I A+P ++EPY+KVPKVLNK+
Subjt:  IRADTEGGNQRNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

Q7XZZ1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.2e-33

66.04

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Query:  SSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDIPETFENREAMIGAVPVFDEPYIKVP
        ++ A+  S +L+PPD+PRLA  ARISL+P +AEEFAPKI QVVDWFGQLQ VDL+S+EPS+RA T  GN  R D PETF NR+A+I +VP +D+PYIKVP
Subjt:  SSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDIPETFENREAMIGAVPVFDEPYIKVP

Query:  KVLNKE
        +VLNKE
Subjt:  KVLNKE

Arabidopsis top hits

e value

%identity

Alignment

AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

5.6e-32

57.66

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Query:  NISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDIPETFENREAMIGAVPVFDEP
        N  I  S ++   S+ LQPPDV RLAQTARISLTP + EE   KI +V+DWFGQLQ VD+ S+EP+IRA+ +GGN R D PETF+NR+++  ++P F++ 
Subjt:  NISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDIPETFENREAMIGAVPVFDEP

Query:  YIKVPKVLNKE
        Y+KVPK+LNKE
Subjt:  YIKVPKVLNKE

Sequences

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CDS sequence

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ATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTAAAGCGCCAAATCTTCATCTCTACCGCCTTCCACTCCCTTCCTGTTTCCAACATCTC
AATCCGAAATTCTTCGACTGCTTCAGGAATTTCAGCTTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTCAAACAGCTCGAATTTCTCTCACTCCCACTCAGGCTGAAG
AATTTGCGCCTAAAATTACTCAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGATACTGAAGGTGGCAATCAG
CGGAACGACATTCCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTCGATGAGCCGTATATCAAAGTTCCCAAAGTTCTGAATAAGGAGTAG

mRNA sequence

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Protein sequence

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MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ
RNDIPETFENREAMIGAVPVFDEPYIKVPKVLNKE

CSPI03G45940 (gene) of Cucumber (PI 183967) v1 genome