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CSPI03G47170 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G47170
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCytochrome c oxidase subunit 6B
Genome locationChr3:40200679..40202404
RNA-Seq ExpressionCSPI03G47170
SyntenyCSPI03G47170
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651459.1 hypothetical protein Csa_002423 [Cucumis sativus]1.1e-34100Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEGGTRT
        MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEGGTRT
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEGGTRT

XP_008465918.1 PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo]3.6e-2282.28Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSE--DRDNKVRAEEG
        MSASQIDPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQT    NDD RR GSE  D+DNKV  +EG
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSE--DRDNKVRAEEG

XP_031737980.1 putative cytochrome c oxidase subunit 6b-like isoform X1 [Cucumis sativus]1.6e-3096.1Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEG
        MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKV  +EG
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEG

XP_031737981.1 cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus]1.6e-3096.1Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEG
        MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKV  +EG
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEG

XP_038886888.1 putative cytochrome c oxidase subunit 6b-like [Benincasa hispida]1.4e-2691.55Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNK
        MSA+Q+DPHDKMRSRD+SKV RGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRG ED DNK
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNK

TrEMBL top hitse value%identityAlignment
A0A0A0LEH8 Uncharacterized protein7.8e-3196.1Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEG
        MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKV  +EG
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEG

A0A1S3CQ05 putative cytochrome c oxidase subunit 6b-like1.7e-2282.28Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSE--DRDNKVRAEEG
        MSASQIDPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQT    NDD RR GSE  D+DNKV  +EG
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSE--DRDNKVRAEEG

A0A5D3E4S8 Putative cytochrome c oxidase subunit 6b-like1.7e-2282.28Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSE--DRDNKVRAEEG
        MSASQIDPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQT    NDD RR GSE  D+DNKV  +EG
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSE--DRDNKVRAEEG

A0A6J1F3D0 cytochrome c oxidase subunit 6b-3-like3.2e-1678.46Show/hide
Query:  RSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEG
        R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSS  SAQTNLDGN  DRR G +D+D+KV  EEG
Subjt:  RSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEG

V7CH48 Uncharacterized protein3.0e-1463.64Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSE
        MSA+Q+DPHDKMR+RD++KVARG+QAPRPAH+YGTVS PPPPSS+  P    N +G  D   +G+E
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSE

SwissProt top hitse value%identityAlignment
Q9LPJ2 Putative cytochrome c oxidase subunit 6b-like2.5e-1060Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD
        MS++Q+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS  PPP + +   A+    G + D
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD

Arabidopsis top hitse value%identityAlignment
AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein1.8e-1160Show/hide
Query:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD
        MS++Q+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS  PPP + +   A+    G + D
Subjt:  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGCGTCTCAGATAGATCCTCACGACAAGATGAGATCTAGAGACATGAGCAAGGTGGCACGTGGCGAACAGGCACCAAGGCCAGCTCATGAATACGGCACCGTTTC
AAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCTTCCGCTCAGACCAACCTCGACGGCAACGACGATGATCGCCGCCGCGGTAGTGAAGACAGAGATAATAAGGTGCGTG
CAGAAGAAGGGGGAACACGCACCTGA
mRNA sequenceShow/hide mRNA sequence
CGTTCCCATTTTATATATACAAAGAAAGAAAAGAAACCCAGAAAGTAGAAAAGCTAAAAAACAATTTAATAATGTCAGCGTCTCAGATAGATCCTCACGACAAGATGAGA
TCTAGAGACATGAGCAAGGTGGCACGTGGCGAACAGGCACCAAGGCCAGCTCATGAATACGGCACCGTTTCAAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCTTCCGC
TCAGACCAACCTCGACGGCAACGACGATGATCGCCGCCGCGGTAGTGAAGACAGAGATAATAAGGTGCGTGCAGAAGAAGGGGGAACACGCACCTGAATGCAAGAAGTTC
GCCAAGTATTATCGATCTCTATGTCCTGGTGAATGGGT
Protein sequenceShow/hide protein sequence
MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVRAEEGGTRT