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CSPI03G47290 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G47290
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB2
Genome locationChr3:40368694..40369677
RNA-Seq ExpressionCSPI03G47290
SyntenyCSPI03G47290
Gene Ontology termsGO:0032774 - RNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60447.1 hypothetical protein Csa_002577 [Cucumis sativus]2.3e-44100Show/hide
Query:  MSGPKQVEAQEMKEPPRFFFFSESAEEFGEREIEMGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MSGPKQVEAQEMKEPPRFFFFSESAEEFGEREIEMGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
Subjt:  MSGPKQVEAQEMKEPPRFFFFSESAEEFGEREIEMGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
XP_004148372.3 uncharacterized protein LOC101212897 [Cucumis sativus]4.1e-38100Show/hide
Query:  MKEPPRFFFFSESAEEFGEREIEMGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MKEPPRFFFFSESAEEFGEREIEMGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
Subjt:  MKEPPRFFFFSESAEEFGEREIEMGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
XP_016903560.1 PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo]1.9e-2293.33Show/hide
Query:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Subjt:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
XP_022973256.1 uncharacterized protein LOC111471813 [Cucurbita maxima]6.2e-1889.66Show/hide
Query:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
        M KSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S  DSSS TP
Subjt:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
XP_023553989.1 uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo]4.3e-1989.66Show/hide
Query:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
        M KSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S  DSSS TP
Subjt:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
TrEMBL top hitse value%identityAlignment
A0A0A0LIB2 Uncharacterized protein1.1e-44100Show/hide
Query:  MSGPKQVEAQEMKEPPRFFFFSESAEEFGEREIEMGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MSGPKQVEAQEMKEPPRFFFFSESAEEFGEREIEMGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
Subjt:  MSGPKQVEAQEMKEPPRFFFFSESAEEFGEREIEMGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
A0A1S4E6G4 uncharacterized protein LOC1035034909.0e-2393.33Show/hide
Query:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Subjt:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
A0A5A7TAA3 Putative membrane lipoprotein9.0e-2393.33Show/hide
Query:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Subjt:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
A0A6J1DRK3 uncharacterized protein LOC1110231825.1e-1883.33Show/hide
Query:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        M KSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S  DSS    +S
Subjt:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
A0A6J1I859 uncharacterized protein LOC1114718133.0e-1889.66Show/hide
Query:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
        M KSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S  DSSS TP
Subjt:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G17085.1 Putative membrane lipoprotein5.6e-1771.67Show/hide
Query:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        M KSF+LIQTVA +G FSA+S WYGFMFGRESARK+LG LI++LRRG S  DS   TPHS
Subjt:  MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGGCCTAAACAAGTGGAAGCCCAAGAAATGAAAGAACCTCCGCGTTTCTTCTTCTTCTCTGAATCGGCGGAGGAATTTGGTGAGAGAGAAATTGAAATGGGGAA
ATCCTTCACTCTGATTCAGACTGTTGCGACTGCCGGAGCCTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAGTCAGCTCGTAAAGACTTGGGAGATT
TAATTCAAGATCTACGACGAGGAATTTCAAAACCCGATTCTTCTTCTGAAACTCCTCATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGGCCTAAACAAGTGGAAGCCCAAGAAATGAAAGAACCTCCGCGTTTCTTCTTCTTCTCTGAATCGGCGGAGGAATTTGGTGAGAGAGAAATTGAAATGGGGAA
ATCCTTCACTCTGATTCAGACTGTTGCGACTGCCGGAGCCTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAGTCAGCTCGTAAAGACTTGGGAGATT
TAATTCAAGATCTACGACGAGGAATTTCAAAACCCGATTCTTCTTCTGAAACTCCTCATTCTTGATTTGCTACTTTATGTCTTTCACCTTATGGAACAAGAAGATCTGTA
GTTTTTGAATGGATGCGTTTTGTGAAGTATCGATTAACCTAGATATTTGGAACCATATCGATTTTGTATTTTGTACAAAGCTCAAGGCGTTTTGTGGGTCTTTCTTCAAT
CCTTCCATTTCTTTTTTGTTATTCTCATCAAATTTGCAAATTTTATTCTAGATTTTCTCTTCACGTAGATGTTTTTTTTTTCTTTCCATCTCTGATTCCACAAAGAGACC
AACCCAAGACTTTATGAAATGATTCACCGGAAACAAAATCGATGATCCGTGACGTGATGTTATCGCTTCTCCAAGTCGTATATAAAATGTGTGTATGCAACTCACATATC
ATATTCCAACAAATAGCAAAAATGTGACCCACCAACATTGGCAAGGCTACATTACATGTTTATGGGTGCAACCGATCATCTTCAAAACTAGCAACAATGTGTGGTTAAAA
GAAAACAACAATGTACAAAAATTCTAGATAACTATTTAAAATGTATGGAATGTGACAAGAAGAAGGGTGGAGCATCGAATGAAGTACATATCTCAATGAGACTTCTCTTT
AACATTTTGATGGATCGAAC
Protein sequenceShow/hide protein sequence
MSGPKQVEAQEMKEPPRFFFFSESAEEFGEREIEMGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS