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CSPI04G00380 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G00380
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRadical SAM superfamily protein isoform 1
Genome locationChr4:202236..202623
RNA-Seq ExpressionCSPI04G00380
SyntenyCSPI04G00380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044340.1 putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa]3.9e-5193.81Show/hide
Query:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD-QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQV
        MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD QR ++ELTHSRSVNKVAFGSSTRPSNGFESNFYSY GQV
Subjt:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD-QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQV

Query:  SNRPAYNYGNPSR
        SNRPAY+YGNP R
Subjt:  SNRPAYNYGNPSR

KAG6576920.1 hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sororia]7.1e-2974.26Show/hide
Query:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS
        MEGLIPYLFHAMKKQKPRH YRSQSVGSSRSYHLL   NDESSHRRTRSD+QPP FE+LDQRS  EL HSRSV+K AFGS             SY GQVS
Subjt:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS

Query:  N
        N
Subjt:  N

KAG7014945.1 NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-2974.26Show/hide
Query:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS
        MEGLIPYLFHAMKKQKPRH YRSQSVGSSRSYHLL   NDESSHRRTRSD+QPP FE+LDQRS  EL HSRSV+K AFGS             SY GQVS
Subjt:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS

Query:  N
        N
Subjt:  N

KGN52765.1 hypothetical protein Csa_015267 [Cucumis sativus]8.9e-56100Show/hide
Query:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS
        MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS
Subjt:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS

Query:  NRPAYNYGNPSR
        NRPAYNYGNPSR
Subjt:  NRPAYNYGNPSR

XP_038905929.1 uncharacterized protein LOC120091851 [Benincasa hispida]8.1e-4183.64Show/hide
Query:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS
        MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLLIT NDESSHRRTRSD+QPP  EF DQRST EL HSRSV+K AFGSSTRPS GFES F SY GQV+
Subjt:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS

Query:  NRPAYNYGNP
        N+P Y YGNP
Subjt:  NRPAYNYGNP

TrEMBL top hitse value%identityAlignment
A0A0A0KT06 Uncharacterized protein4.3e-56100Show/hide
Query:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS
        MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS
Subjt:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS

Query:  NRPAYNYGNPSR
        NRPAYNYGNPSR
Subjt:  NRPAYNYGNPSR

A0A5A7TM95 Putative beta-D-xylosidase 5 isoform X21.9e-5193.81Show/hide
Query:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD-QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQV
        MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD QR ++ELTHSRSVNKVAFGSSTRPSNGFESNFYSY GQV
Subjt:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD-QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQV

Query:  SNRPAYNYGNPSR
        SNRPAY+YGNP R
Subjt:  SNRPAYNYGNPSR

A0A5C7I5L1 Uncharacterized protein4.0e-1768.35Show/hide
Query:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLI--TANDESSHRRTRSDYQPP--TFEFLDQRSTRELTHSRSVNK
        MEGLIP+L HAMKKQ+P+HSYRS SVGS+RSYHLL    A D SSHRRTRSD+QPP  T +FL QRS  E   SR+VN+
Subjt:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLI--TANDESSHRRTRSDYQPP--TFEFLDQRSTRELTHSRSVNK

A0A7J7HFZ0 Uncharacterized protein8.0e-1863.64Show/hide
Query:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLIT--ANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNK
        MEGLIP L +A+KKQ+P H+YR  S GS+RSYHLL+   + + SSHRRTRS++QPPT +FLDQRST E +HSRS N+
Subjt:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLIT--ANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNK

B9SNE5 Uncharacterized protein5.2e-1754.9Show/hide
Query:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITAN--DESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQ
        MEGLIPYL HA++KQKP++SYRS SVGSSRSYHLL  A+    SSHRRTRS++QPPT E LDQR   E   S S+      +S + ++G +    SY  Q
Subjt:  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITAN--DESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQ

Query:  VS
        +S
Subjt:  VS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G19615.1 unknown protein4.2e-1158.9Show/hide
Query:  MEGLIPYLFHAMKK-QKPRHS-YRSQSVGSSRSYHLLITAND------ESSHRRTRSDYQPPT-FEFLDQRST
        MEGLIPYL HA+KK  KP H  YRS SVGSSRSY  L+   D       SSHRRTRSDY P    +  DQRS+
Subjt:  MEGLIPYLFHAMKK-QKPRHS-YRSQSVGSSRSYHLLITAND------ESSHRRTRSDYQPPT-FEFLDQRST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCTATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTACTGATCAC
TGCCAACGATGAGTCGTCGCACCGACGAACACGATCAGATTACCAGCCACCAACATTCGAGTTTTTGGACCAACGATCGACACGGGAGTTAACACATTCCCGCAGTGTCA
ACAAAGTCGCCTTTGGATCATCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTCTTATACTGGTCAAGTTTCAAATAGGCCTGCTTATAATTATGGTAATCCT
TCTCGTTGA
mRNA sequenceShow/hide mRNA sequence
GCTTTTCATTTTCTCTTATAACACAAAGAAGAATAAAAGTTAGGATAATATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCT
ATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTACTGATCACTGCCAACGATGAGTCGTCGCACCGACGAACACGATCAGATTACCAGCCACCAACATTCGAG
TTTTTGGACCAACGATCGACACGGGAGTTAACACATTCCCGCAGTGTCAACAAAGTCGCCTTTGGATCATCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTC
TTATACTGGTCAAGTTTCAAATAGGCCTGCTTATAATTATGGTAATCCTTCTCGTTGA
Protein sequenceShow/hide protein sequence
MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNP
SR