; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G00480 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G00480
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUBP-type domain-containing protein
Genome locationChr4:251132..252933
RNA-Seq ExpressionCSPI04G00480
SyntenyCSPI04G00480
Gene Ontology termsGO:0009958 - positive gravitropism (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001607 - Zinc finger, UBP-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044348.1 histone deacetylase 6 [Cucumis melo var. makuwa]3.5e-7694.59Show/hide
Query:  MAEKAGSSSSTSNPLTLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQST
        MAE+AGSSSSTSN L LI  IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYEQST
Subjt:  MAEKAGSSSSTSNPLTLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY LKFGE PPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR

KAG6600290.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]8.0e-6581.51Show/hide
Query:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
        MA +AGSSS  SNP   +IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T C +C+NPKENW+CLCCK+VFCSRFVNKHMLQHY+QS H 
Subjt:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR
        LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAY LKFGEAPPFR
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR

XP_004152271.1 histone deacetylase 6 [Cucumis sativus]1.4e-8099.32Show/hide
Query:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
        MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
Subjt:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR
        LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY LKFGEAPPFR
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR

XP_008454385.1 PREDICTED: histone deacetylase 6 [Cucumis melo]1.2e-7695.27Show/hide
Query:  MAEKAGSSSSTSNPLTLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQST
        MAE+AGSSSSTSN L LI  IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYEQST
Subjt:  MAEKAGSSSSTSNPLTLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY LKFGEAPPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR

XP_038904979.1 histone deacetylase 6 [Benincasa hispida]1.8e-6987.67Show/hide
Query:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
        MA++AGSSS  SNPL LI+E+EVEEELLYGA SGWV+ALTSCDHLA LS DLAHIPPP  PCS+CQNPKENW+CL CKDVFCSRFVNKHMLQHYEQ THC
Subjt:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR
        LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY LKFGEAPPFR
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR

TrEMBL top hitse value%identityAlignment
A0A061E839 Regulator of Vps4 activity in the MVB pathway protein4.9e-6073.29Show/hide
Query:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
        MA++AG+SSS    L +I+E+E + +L+YGA SGWV+A T CDHLASLSSDLAHIP P TPC++CQ+P ENW+CLCCKDV CSRFVNKHML+HY+Q+THC
Subjt:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR
        +ALSYSDLSVWCF+CD YLDAQVI++LRPVHE AY LKFGEAPP R
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR

A0A0A0KT14 UBP-type domain-containing protein6.6e-8199.32Show/hide
Query:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
        MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
Subjt:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR
        LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY LKFGEAPPFR
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR

A0A1S3BZ94 histone deacetylase 65.8e-7795.27Show/hide
Query:  MAEKAGSSSSTSNPLTLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQST
        MAE+AGSSSSTSN L LI  IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYEQST
Subjt:  MAEKAGSSSSTSNPLTLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY LKFGEAPPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR

A0A5A7TNA2 Histone deacetylase 61.7e-7694.59Show/hide
Query:  MAEKAGSSSSTSNPLTLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQST
        MAE+AGSSSSTSN L LI  IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYEQST
Subjt:  MAEKAGSSSSTSNPLTLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY LKFGE PPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR

A0A6J1D695 histone deacetylase 61.1e-6280.82Show/hide
Query:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
        MA +AGSSSS   P   IIE+E EE+ L+GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENW+CLCCK++ CSRFVNKHMLQHY+QSTHC
Subjt:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR
        LALSYSDLSVWCFSCDAYLDAQVIQELRPV+EVAY LKFGEAPPFR
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR

SwissProt top hitse value%identityAlignment
Q20296 Histone deacetylase 62.9e-1735.37Show/hide
Query:  AEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPP----PQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQS
        +  +GSSSS++ P   +       E++    +  V  L +C HL     ++  +PP     +T CS+CQ   E W CL C    C RFVN+H + H+  S
Subjt:  AEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPP----PQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQS

Query:  THCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPP
        +H +ALS +DLSVWC+ CD+Y+       L      A+  KFGE  P
Subjt:  THCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPP

Q54QE6 NAD-dependent deacetylase sir2A8.2e-1245Show/hide
Query:  TPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL
        T C  C +  ENW+C+ C  V CSR VN H  +H+E + H ++ S+SD S WC++CD Y+
Subjt:  TPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL

Q9H0E7 Ubiquitin carboxyl-terminal hydrolase 444.1e-1132.14Show/hide
Query:  ALTSCDHLA--SLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL
        A+ +C H+    L+ D + + P +  C  C   +  W CL C  V C R++ +H L+H+++S+H +AL  +++ V+C+ CD Y+
Subjt:  ALTSCDHLA--SLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL

Q9UBN7 Histone deacetylase 65.3e-1936.11Show/hide
Query:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
        + E AG      + L        ++ + Y      V  L  C HL ++    A       PC  C   +ENWVCL C  V+C R++N HMLQH+  S H 
Subjt:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPP
        L LSY DLS WC+ C AY+  Q + +   V  +A+  KFGE  P
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPP

Q9Z2V5 Histone deacetylase 62.4e-1938.19Show/hide
Query:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
        + E AG     S  LT    D   +++ Y      V  L+ C HL ++    A       PC  C   +ENWVCL C  V+CSR+VN HM+ H+E S H 
Subjt:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPP
        L LS  DLS WC+ C AY+     ++L+ V   A+  KFGE  P
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPP

Arabidopsis top hitse value%identityAlignment
AT2G14830.1 Regulator of Vps4 activity in the MVB pathway protein5.8e-1357.81Show/hide
Query:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQ
        MAEKA SSSS+S+P    + DE ++ +L GAGSGWV+A  +CDHL +LS DL H+P P TPCS+
Subjt:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQ

AT2G14830.2 Regulator of Vps4 activity in the MVB pathway protein6.6e-5768.06Show/hide
Query:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC
        MAEKA SSSS+S+P    + DE ++ +L GAGSGWV+A  +CDHL +LS DL H+P P TPCS+CQNP ENW+CLCCK+V CSRFVN+HML H++Q+ HC
Subjt:  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPP
        LALSYSDLSVWCF C+AYLDAQ+I +LRP+H+ AY LKFGEAPP
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPP

AT2G26000.1 zinc finger (C3HC4-type RING finger) family protein1.1e-0631.75Show/hide
Query:  PPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL
        P  + C  CQ  +  W+C+ C  V C R+   H  +H+E++ HC +L      VW ++ D Y+
Subjt:  PPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL

AT2G26000.2 zinc finger (C3HC4-type RING finger) family protein1.1e-0631.75Show/hide
Query:  PPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL
        P  + C  CQ  +  W+C+ C  V C R+   H  +H+E++ HC +L      VW ++ D Y+
Subjt:  PPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAAAAGCCGGTTCATCTTCTTCCACTTCCAACCCACTGACACTAATAATCGAAGATGAAGTTGAGGAAGAACTTTTATACGGTGCTGGATCGGGATGGGTCCA
AGCTCTGACTTCTTGCGATCATCTCGCTTCCTTATCTTCCGACCTCGCTCATATTCCGCCCCCTCAGACTCCCTGTAGCCAATGCCAGAATCCCAAGGAGAATTGGGTGT
GTTTATGTTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCAATCAACTCATTGTCTTGCACTCAGCTACAGTGATTTGTCAGTT
TGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACACACTGAAATTTGGCGAGGCTCCACCATTTCGATA
A
mRNA sequenceShow/hide mRNA sequence
CCATAATGTACTTCTCTTAATTAGAAGCTGCAGAGTCGAAGGTAGTCGTGAAATTCAGTGTGATCATCAATGGCGGAAAAAGCCGGTTCATCTTCTTCCACTTCCAACCC
ACTGACACTAATAATCGAAGATGAAGTTGAGGAAGAACTTTTATACGGTGCTGGATCGGGATGGGTCCAAGCTCTGACTTCTTGCGATCATCTCGCTTCCTTATCTTCCG
ACCTCGCTCATATTCCGCCCCCTCAGACTCCCTGTAGCCAATGCCAGAATCCCAAGGAGAATTGGGTGTGTTTATGTTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAAT
AAGCACATGCTTCAACATTATGAGCAATCAACTCATTGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGAT
TCAGGAATTACGACCAGTACACGAAGTTGCCTACACACTGAAATTTGGCGAGGCTCCACCATTTCGATAATATCAATCATCCTGCACTGGGGGAACTGAAATATCTGATT
ATTAGTGTTATAACTTTTCCAGTCTCTACTTATTAGATGTTTTGATTTCTTGGTCTGTATATGTCAAGCAAATGGCTTATGATCTTCACATGAATTAGGTTGGGTTGTCA
AATGTTCATTGTAATTTGGTTGTTCACTTTACAGAAGTGAGGGATAGATTAGAATCTCATATCTTGTTCAAGAAAATTTTAAGAAGCTTTTACTTGAAAATGACAAAATT
CTTGTTTCAAACCTTGATGATAACATGAATGAAATTGGTTCCCAACTTTTGTCACTC
Protein sequenceShow/hide protein sequence
MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSV
WCFSCDAYLDAQVIQELRPVHEVAYTLKFGEAPPFR