CuGenDBv2

Gene ID	CSPI04G00550
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	zinc finger SWIM domain-containing protein 7
Genome location	Chr4:276363..278278
RNA-Seq Expression	CSPI04G00550
Synteny	CSPI04G00550
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0097196 - Shu complex (cellular component) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007527 - Zinc finger, SWIM-type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152266.1 zinc finger SWIM domain-containing protein 7 isoform X1 [Cucumis sativus]

4.5e-67

99.24

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_008454376.1 PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo]

5.0e-66

97.73

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_022942858.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata]

3.4e-62

93.18

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS + AEAVWK+IESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_022983272.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima]

4.4e-62

92.42

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWK+IESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

XP_038903696.1 zinc finger SWIM domain-containing protein 7 [Benincasa hispida]

8.0e-64

94.7

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISG PSTRSIFQV+GESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLA S+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWG5 SWIM-type domain-containing protein

2.2e-67

99.24

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A1S3BZP2 zinc finger SWIM domain-containing protein 7

2.4e-66

97.73

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSASIVVAEAVWK+IESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAASVGACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A6J1D5Z4 zinc finger SWIM domain-containing protein 7

2.2e-59

88.64

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWK+I+STR VTDDQLS+LHFLFGKNFERATRIVDQRGVKKI G PS RSIFQVVGESRRKEEY CFPENFCACYSFFYD VNRGEQLCC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GA IE KVSDEELA+LLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A6J1FSJ7 zinc finger SWIM domain-containing protein 7 isoform X2

1.6e-62

93.18

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS + AEAVWK+IESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GACIEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

A0A6J1J6W2 zinc finger SWIM domain-containing protein 7 isoform X2

2.1e-62

92.42

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWK+IESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLAAS+GAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G33925.1 unknown protein

4.6e-49

66.67

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        M+ +++VA+AVW  IEST  VT++QLSIL  LFGKN E+ATRI+D+RGVKKISG PS RSIFQVVGES+++EEYLCFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKVSDEELAILLSNL
        KHQLAARLA+S+G   E++VSD+ LA++LS +
Subjt:  KHQLAARLAASVGACIEVKVSDEELAILLSNL

AT4G33925.2 unknown protein

8.9e-45

68.07

Show/hide

Query:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC
        M+ +++VA+AVW  IEST  VT++QLSIL  LFGKN E+ATRI+D+RGVKKISG PS RSIFQVVGES+++EEYLCFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLA+S+G   E++
Subjt:  KHQLAARLAASVGACIEVK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTGCGAGTATTGTGGTAGCTGAAGCTGTGTGGAAGAAGATCGAGTCCACTCGATTAGTGACTGATGATCAGCTTTCAATCTTGCATTTCTTGTTTGGCAAGAACTT
CGAGCGAGCTACTCGAATTGTTGATCAAAGAGGGGTCAAGAAAATTTCAGGCCACCCAAGCACACGATCTATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGT
ATCTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAATTAGCTGCAAGGCTTGCTGCT
TCAGTGGGGGCTTGCATTGAAGTTAAAGTATCTGATGAAGAGCTGGCAATATTGTTGTCCAATCTCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSASIVVAEAVWKKIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRSIFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAA
SVGACIEVKVSDEELAILLSNL

CSPI04G00550 (gene) of Cucumber (PI 183967) v1 genome