CuGenDBv2

Gene ID	CSPI04G00700
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	Chr4:355828..361291
RNA-Seq Expression	CSPI04G00700
Synteny	CSPI04G00700
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

1.4e-242

99.77

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

5.2e-237

97.7

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_022983449.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

7.3e-223

91.3

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FH L TLSNPKS TILR RLPT  SQR FH+SIL CSSTSQSPE N++SAES VN GLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAP  A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIR+QQ+SEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_023528576.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]

2.1e-222

91.08

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FH L TLSNPKS TILR RLPT  SQR FH+SIL CSSTSQSPEAN++SAES VN GLQLFSKGRVKEALVQFEAAL+M+PNP+EAQAALYN
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAP  A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIR+QQ+SEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

2.0e-228

94.71

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHL T S+PKS TILRPRL TSQR FH+SIL  SSTSQSPEANL+SAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FF VALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGI+VFVALFLWDNKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP T  AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIR+QQ+SE VTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

6.9e-243

99.77

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

2.5e-237

97.7

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

2.5e-237

97.7

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A6J1CPA1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

1.3e-222

90.89

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTS----QRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAL
        MA+ATLPL+HHL   SNPKS T LRPRLPTS     + FHLSI  CSSTSQSPEAN+++AESCVN GLQLFSKGRVKEALVQF+AALN+DPNP+EAQAA 
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPTS----QRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAL

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISL

Query:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDV
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAPT  A A LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIR+QQ+SEGVTPGEDV
Subjt:  KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDV

Query:  YIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        YIILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  YIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

3.5e-223

91.3

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSLTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FH L TLSNPKS TILR RLPT  SQR FH+SIL CSSTSQSPE N++SAES VN GLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHHLPTLSNPKSLTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAP  A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIR+QQ+SEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

1.1e-173

70.26

Show/hide

Query:  MAMATLP-LFHHLP-TLSNPKS-LTILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNFGLQLFSKGRVKEALVQFEA
        MA+AT P L  H P  +SN  S +   RP LP    T          HL + + SS+S S   P  N      +AE CVN GL LF +GRVK+ALVQFE 
Subjt:  MAMATLP-LFHHLP-TLSNPKS-LTILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNFGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  KFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        KFFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET GN A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  KFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI
        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA ++ AA +LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WI
Subjt:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI

Query:  RNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        R+QQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPM+ +LSKLE+
Subjt:  RNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

7.9e-175

70.26

Show/hide

Query:  MAMATLP-LFHHLP-TLSNPKS-LTILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNFGLQLFSKGRVKEALVQFEA
        MA+AT P L  H P  +SN  S +   RP LP    T          HL + + SS+S S   P  N      +AE CVN GL LF +GRVK+ALVQFE 
Subjt:  MAMATLP-LFHHLP-TLSNPKS-LTILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNFGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  KFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        KFFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET GN A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  KFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI
        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA ++ AA +LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WI
Subjt:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI

Query:  RNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK
        R+QQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPM+ +LSKLE+
Subjt:  RNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

1.5e-32

31.23

Show/hide

Query:  DLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-
        D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+     + +V E    L V++G   +F  L+  +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAE
          N+++ +  LR   R VI AG  E +  A ++++ +   L+ RGV++V     +G  P +E   F     A         E+  +R + +         
Subjt:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAE

Query:  IRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKL
          +R   +   EWE W+  Q++   V+    VY+ LRLDGRVR SG G P WQ  + +LPP++ + + L
Subjt:  IRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTATGGCTACTCTTCCTCTGTTCCACCACCTCCCCACCCTTTCAAACCCCAAATCACTCACCATTCTCAGGCCCCGGTTACCCACTTCTCAAAGAACTTTCCATCT
CTCTATTCTCTCTTGCTCTTCTACTTCCCAGTCCCCAGAAGCTAATCTCCAATCTGCAGAGTCCTGTGTCAATTTCGGTCTCCAGCTCTTCTCTAAAGGACGGGTCAAAG
AAGCTTTGGTCCAGTTTGAAGCAGCTCTGAATATGGATCCCAACCCAATGGAGGCTCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAG
AAAGCCGCTGACTGTCTGCGTGTCGCATTAAGAGAATATAACCTGAAATTTGGCACCATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGA
ATTGCAAGAAGAGGCTAGGATGGGAGGAGAGGATATAGGATACGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTACAAGCACCTTTTCGTGGGGTTCGGAAGTTCT
TTTATGTGGCACTATCTGCAGCAGCTGGAATTTCATTGCTGTTTAACATACCCAGGTTATTTCGTGCTATTCAAGGTGGTGATGGAGCTCCTGATGTTTGGGAAACTGCT
GGAAATTTAGCTGTTAATGTTGGAGGTATTATTGTTTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAACGAAACGTT
ATCGAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACTGTTTCTTCAG
CCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCTGTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTT
GGTGCTCCAACCACCGCTGCTGCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATT
CAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAAACCAGCAGGAATCCGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATG
GTCGAGTTCGAAGATCTGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAATTACCACCAATGGAAGCTCTTCTAAGCAAGCTAGAAAAATGA

mRNA sequence

Show/hide mRNA sequence

GACTTTTTAAGTTAATGGGTGGAGGTGTGTGGTATACGCGCGGTTCGTTCGTTCATTCCTTCATCTTACTTTCTTCTTCATCCTTTTGTGTTGGAATTGGATATTACATT
TTTTGTTTTCGGCCATGTGAGCGTGAGGTCTCCAAACTCCCGACCTAAACTCTCCAATGGCTATGGCTACTCTTCCTCTGTTCCACCACCTCCCCACCCTTTCAAACCCC
AAATCACTCACCATTCTCAGGCCCCGGTTACCCACTTCTCAAAGAACTTTCCATCTCTCTATTCTCTCTTGCTCTTCTACTTCCCAGTCCCCAGAAGCTAATCTCCAATC
TGCAGAGTCCTGTGTCAATTTCGGTCTCCAGCTCTTCTCTAAAGGACGGGTCAAAGAAGCTTTGGTCCAGTTTGAAGCAGCTCTGAATATGGATCCCAACCCAATGGAGG
CTCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAGAAAGCCGCTGACTGTCTGCGTGTCGCATTAAGAGAATATAACCTGAAATTTGGC
ACCATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGCTAGGATGGGAGGAGAGGATATAGGATACGGTTTTCGAAG
AGATCTTAAACTCATTAGTGAAGTACAAGCACCTTTTCGTGGGGTTCGGAAGTTCTTTTATGTGGCACTATCTGCAGCAGCTGGAATTTCATTGCTGTTTAACATACCCA
GGTTATTTCGTGCTATTCAAGGTGGTGATGGAGCTCCTGATGTTTGGGAAACTGCTGGAAATTTAGCTGTTAATGTTGGAGGTATTATTGTTTTTGTGGCATTATTTTTA
TGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAACGAAACGTTATCGAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCT
TCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACTGTTTCTTCAGCCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTGCTCT
TAGTTCCTGTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTTGGTGCTCCAACCACCGCTGCTGCTGCTGCTCTGCCATCTATTGGGGAAGATTTT
GAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAAACCAGCA
GGAATCCGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCTGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAG
AATTACCACCAATGGAAGCTCTTCTAAGCAAGCTAGAAAAATGAGAAAAACAGAATTGACATACATACACCGTGGCAACTATCAATGGCGTCACTTTTGCTACCCGTTCA
ACTTCCACAGCAATACCCAGAAGAGTAAACTGTCTAGTAATACATAGTCTTAGCTAGTTGTTTTTGTAACTATAAATGTGTTTGGAGGATTGGATGGGTGATTGATCCAA
ACCTGAGACCTTTCTGTTCTATTTAAATGCATGTTCTCATCTCTTCAAAGTCCAAAAGAAGATGATAATCCTTTCGGGAATTCAATTGATTTCTTTGGATTAGAGTTCAT
TGTTTCGTCTATAATTGATTTAGGTGGTTGACTCTAAAAGGCCTTGAAAGATTCAAAGAGATTAGATGGGTCATTGGGGC

Protein sequence

Show/hide protein sequence

MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGK
KAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETA
GNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGF
GAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK

CSPI04G00700 (gene) of Cucumber (PI 183967) v1 genome