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CSPI04G01410 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G01410
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTATA-binding protein-associated factor 2N isoform X3
Genome locationChr4:793730..794742
RNA-Seq ExpressionCSPI04G01410
SyntenyCSPI04G01410
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044427.1 putative RNA-binding protein C17H9.04c-like [Cucumis melo var. makuwa]6.6e-7595.92Show/hide
Query:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGRVAMN
        MCQRCGEPKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPFAF SPAR AASAWKSGRVAMN
Subjt:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGRVAMN

Query:  ITLQAGWSALDAVLRETPINKISQAKILLHHQVLGMLSTEKNFKETS
        ITLQAGWSALDAVLRETP NK SQAKILLHHQVLGMLSTEKNFKETS
Subjt:  ITLQAGWSALDAVLRETPINKISQAKILLHHQVLGMLSTEKNFKETS

KGN52873.1 hypothetical protein Csa_014917 [Cucumis sativus]1.8e-48100Show/hide
Query:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
        MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
Subjt:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG

XP_008454250.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo]4.9e-4695.79Show/hide
Query:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
        MCQRCGEPKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPFAF SPAR AASAWKSG
Subjt:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG

XP_022955940.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata]8.1e-4185.26Show/hide
Query:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
        +CQRCG+PK+GGG  R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PR +PRGISPFAF +PAR+ ASAWKSG
Subjt:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG

XP_038892097.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]6.4e-4694.74Show/hide
Query:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
        MCQRCG+PKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISP+AF SPARTAASAWKSG
Subjt:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG

TrEMBL top hitse value%identityAlignment
A0A0A0KTI0 Uncharacterized protein8.8e-49100Show/hide
Query:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
        MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
Subjt:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG

A0A1S3BZE4 uncharacterized RNA-binding protein C17H9.04c-like2.4e-4695.79Show/hide
Query:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
        MCQRCGEPKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPFAF SPAR AASAWKSG
Subjt:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG

A0A5A7TRE1 Putative RNA-binding protein C17H9.04c-like3.2e-7595.92Show/hide
Query:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGRVAMN
        MCQRCGEPKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPFAF SPAR AASAWKSGRVAMN
Subjt:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGRVAMN

Query:  ITLQAGWSALDAVLRETPINKISQAKILLHHQVLGMLSTEKNFKETS
        ITLQAGWSALDAVLRETP NK SQAKILLHHQVLGMLSTEKNFKETS
Subjt:  ITLQAGWSALDAVLRETPINKISQAKILLHHQVLGMLSTEKNFKETS

A0A6J1GWG9 uncharacterized RNA-binding protein C17H9.04c-like3.9e-4185.26Show/hide
Query:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
        +CQRCG+PK+GGG  R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PR +PRGISPFAF +PAR+ ASAWKSG
Subjt:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG

A0A6J1IX27 ranBP2-type zinc finger protein At1g67325-like8.8e-4185.26Show/hide
Query:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
        +CQRCG+PK+GGG GR GSGFG+GGSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PR +PRGISPF FP+PAR+ ASAWKSG
Subjt:  MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein7.9e-1036.17Show/hide
Query:  CQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG
        CQ+CG PK G   G   S + Y  ++V  GDWYC   NCG+HN+ASR+SC++CG  K + +   +        G    A+ +        WK+G
Subjt:  CQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein3.2e-1948.72Show/hide
Query:  CQRCGEPKSG-GGI---------GRGGSGFGY-GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA------------FDFDIPRRSPRGISP
        CQRCG+ +SG GG+         GR  S FG+  GSDVRPGDWYC+VGNCG HNFASRS+CFKCG FKD+  A            FD DI R        
Subjt:  CQRCGEPKSG-GGI---------GRGGSGFGY-GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA------------FDFDIPRRSPRGISP

Query:  FAFPSPARTAASAWKSG
             P     S+WKSG
Subjt:  FAFPSPARTAASAWKSG

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein1.9e-1647.83Show/hide
Query:  CQRCGEPKSGG-----GIGRGG----SGFGYG-GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA---------FDFDIPRRSPRGISPFAFP
        CQRC EP+ GG       G GG    S FG+  G DVRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S           D ++  R  RG+  F   
Subjt:  CQRCGEPKSGG-----GIGRGG----SGFGYG-GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA---------FDFDIPRRSPRGISPFAFP

Query:  SP--ARTAASAWKSG
        S     T  S WKSG
Subjt:  SP--ARTAASAWKSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCCAGCGTTGCGGCGAACCGAAGAGCGGCGGCGGTATCGGAAGAGGTGGGTCTGGTTTCGGGTACGGAGGATCGGATGTGAGGCCCGGGGACTGGTACTGTAGCGT
TGGAAATTGTGGAGCTCACAATTTTGCAAGCCGATCAAGCTGCTTCAAATGTGGAGCTTTCAAAGACGACATGTCGGCCTTTGACTTCGATATTCCTCGTCGTAGTCCTA
GAGGGATTTCCCCATTTGCTTTTCCCAGTCCCGCCCGTACTGCTGCCTCCGCTTGGAAGTCCGGTCGGGTTGCAATGAACATAACTTTGCAAGCAGGATGGAGTGCTTTA
GATGCAGTGCTCCGAGAGACTCCTATTAACAAAATTAGCCAAGCCAAAATCCTCCTTCATCATCAAGTTTTGGGTATGCTCTCAACTGAGAAAAATTTCAAAGAGACTTC
ATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCCAGCGTTGCGGCGAACCGAAGAGCGGCGGCGGTATCGGAAGAGGTGGGTCTGGTTTCGGGTACGGAGGATCGGATGTGAGGCCCGGGGACTGGTACTGTAGCGT
TGGAAATTGTGGAGCTCACAATTTTGCAAGCCGATCAAGCTGCTTCAAATGTGGAGCTTTCAAAGACGACATGTCGGCCTTTGACTTCGATATTCCTCGTCGTAGTCCTA
GAGGGATTTCCCCATTTGCTTTTCCCAGTCCCGCCCGTACTGCTGCCTCCGCTTGGAAGTCCGGTCGGGTTGCAATGAACATAACTTTGCAAGCAGGATGGAGTGCTTTA
GATGCAGTGCTCCGAGAGACTCCTATTAACAAAATTAGCCAAGCCAAAATCCTCCTTCATCATCAAGTTTTGGGTATGCTCTCAACTGAGAAAAATTTCAAAGAGACTTC
ATAA
Protein sequenceShow/hide protein sequence
MCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGRVAMNITLQAGWSAL
DAVLRETPINKISQAKILLHHQVLGMLSTEKNFKETS