CuGenDBv2

Gene ID	CSPI04G04000
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Genome location	Chr4:2535425..2540389
RNA-Seq Expression	CSPI04G04000
Synteny	CSPI04G04000
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0006412 - translation (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005829 - cytosol (cellular component) GO:0005840 - ribosome (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007811 - DNA-directed RNA polymerase III subunit RPC4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044650.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

2.8e-174

95.51

Show/hide

Query:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKN D SPPRRKVKFAPKSSQR+RPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVE+KSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
        IEPEVDEDEEFVLPVA DVNEDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQD MNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
        LDLGL DENTE+TKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGS+CSFLQHVVAI
Subjt:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI

Query:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
        N+E+GQCCDLGDIG RVVVTPDISSLLNSVTNLR
Subjt:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR

TYK16939.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

1.2e-164

95.28

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Query:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKN D SPPRRKVKFAPKSSQR+RPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
        IEPEVDEDEEFVLPVA DVNEDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
        LDLGL DENTE+TKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGS+CSFLQHVVAI
Subjt:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI

Query:  NSEEGQCCDLGDIGNRVV
        N+E+GQCCDLGDIG RVV
Subjt:  NSEEGQCCDLGDIGNRVV

XP_004146914.1 DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus]

3.7e-182

99.7

Show/hide

Query:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
        IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
        LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
Subjt:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI

Query:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
        N+EEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
Subjt:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR

XP_008453902.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo]

1.4e-173

95.51

Show/hide

Query:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKN D SPPRRKVKFAPKSSQR+RPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
        IEPEVDEDEEFVLPVA DVNEDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
        LDLGL DENTE+TKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGS+CSFLQHVVAI
Subjt:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI

Query:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
        N+E+GQCCDLGDIG RVVVTPDISSLLNSVTNLR
Subjt:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR

XP_038879339.1 DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida]

8.0e-153

84.98

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Query:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKN D SPPRRKVKFAPKS+ R+R  PPPVQK EDEDG+GYVAQTRYLLRRA ENLGKR NKV++KSSVQVAFGPGA STSSSIRTYGVPKVEN SRKND
Subjt:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
        IEP+VDEDEEF+LP+  DV E+GK FDKKTKDGI ESSSSA+ TKTK+DYKEPWDY NS YPTTLP+RMPYSGDPE+LDEAEFGQD  +REYDE+SVIPA
Subjt:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
        LDLGLLDE TE+TKYFFQLPARLPLPKQSSTATGKEKVGN RSS S  SS+L DLKKLSAGCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHVVAI
Subjt:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI

Query:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL
        N++EGQCCDLGDIG RV+VTPDISSLLNS+TNL
Subjt:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZ61 Uncharacterized protein

1.8e-182

99.7

Show/hide

Query:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
        IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
        LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
Subjt:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI

Query:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
        N+EEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
Subjt:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR

A0A1S3BYJ9 DNA-directed RNA polymerase III subunit rpc4-like

6.8e-174

95.51

Show/hide

Query:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKN D SPPRRKVKFAPKSSQR+RPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
        IEPEVDEDEEFVLPVA DVNEDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
        LDLGL DENTE+TKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGS+CSFLQHVVAI
Subjt:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI

Query:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
        N+E+GQCCDLGDIG RVVVTPDISSLLNSVTNLR
Subjt:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR

A0A5A7TN83 DNA-directed RNA polymerase III subunit rpc4-like

1.4e-174

95.51

Show/hide

Query:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKN D SPPRRKVKFAPKSSQR+RPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVE+KSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
        IEPEVDEDEEFVLPVA DVNEDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQD MNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
        LDLGL DENTE+TKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGS+CSFLQHVVAI
Subjt:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI

Query:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
        N+E+GQCCDLGDIG RVVVTPDISSLLNSVTNLR
Subjt:  NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR

A0A5D3D2X2 Ribosomal protein L15

5.8e-165

95.28

Show/hide

Query:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKN D SPPRRKVKFAPKSSQR+RPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
        IEPEVDEDEEFVLPVA DVNEDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
        LDLGL DENTE+TKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGS+CSFLQHVVAI
Subjt:  LDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI

Query:  NSEEGQCCDLGDIGNRVV
        N+E+GQCCDLGDIG RVV
Subjt:  NSEEGQCCDLGDIGNRVV

A0A6J1E8A8 DNA-directed RNA polymerase III subunit rpc4-like

1.8e-129

75.22

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Query:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRK
        MKN DPSPPRRK+KFAPKS+ R+RPPP P  KTEDED  G VAQTRYLLRRA ENLGKR NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK
Subjt:  MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRK

Query:  NDIEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVI
         DIEPE  EDEE +LP   D  E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGDPE LDEAEFGQDVM+REYDENS I
Subjt:  NDIEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVI

Query:  PALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV
        PALDLGLLDEN+E+T+YFFQLPA LP PK+SST+TGKEKVGN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG +CSFLQHVV
Subjt:  PALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV

Query:  AINSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL
        AIN+++GQCCDLG+IG RVVVTPDI SLLNS+T+L
Subjt:  AINSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL

SwissProt top hits

e value

%identity

Alignment

P05423 DNA-directed RNA polymerase III subunit RPC4

1.6e-07

33.33

Show/hide

Query:  ESTKYFFQLPARLP--LPKQSSTATGKEKVG---------NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVA
        E    F QLP  LP   P Q       E  G           +   +  + +   L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V+
Subjt:  ESTKYFFQLPARLP--LPKQSSTATGKEKVG---------NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVA

Query:  I---NSEEGQCCDLGDIGNRVVVTPDISSLLN
        +   +S  G+   LG + +++V +PD  SLL+
Subjt:  I---NSEEGQCCDLGDIGNRVVVTPDISSLLN

P25441 DNA-directed RNA polymerase III subunit RPC4

3.1e-06

30.17

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Query:  FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDL---DDLKKLS----AGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAIN-SEEGQCC
        FQLP RLP  ++ +    KE +    S  S    ++   D    LS    AG +G + ++KSG + +++G+++ D+  G+  +FLQ V+A++ +++    
Subjt:  FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDL---DDLKKLS----AGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAIN-SEEGQCC

Query:  D-LGDIGNRVVVTPDI
        + LG +  ++VVTP I
Subjt:  D-LGDIGNRVVVTPDI

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC4

2.1e-07

38.14

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Query:  KEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI---NSEEGQCCDLGDIGNRVVVTPDISSLLN
        +EK   +R + +T +     L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   +S  G    LG I +++V +P+  SLL+
Subjt:  KEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI---NSEEGQCCDLGDIGNRVVVTPDISSLLN

Q8T1V7 DNA-directed RNA polymerase III subunit rpc4

9.9e-05

35.06

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Query:  LKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINSEEG-----QCCDLGDIGNRVVVTPDISSL
        +K++ +G +G L IYKSG   L++G + YD+SSG    FL+ V    ++ G      C  LG     +V  P IS +
Subjt:  LKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINSEEG-----QCCDLGDIGNRVVVTPDISSL

Q91WD1 DNA-directed RNA polymerase III subunit RPC4

9.6e-08

33.86

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Query:  FFQLPARLP--LPKQSSTATGKEKVG---------NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI---N
        F QLP  LP   P Q       E  G           +   +  + +   L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   +
Subjt:  FFQLPARLP--LPKQSSTATGKEKVG---------NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI---N

Query:  SEEGQCCDLGDIGNRVVVTPDISSLLN
        S  G+   LG + +++V +PD  SLL+
Subjt:  SEEGQCCDLGDIGNRVVVTPDISSLLN

Arabidopsis top hits

e value

%identity

Alignment

AT4G25180.1 RNA polymerase III RPC4

3.2e-43

37.43

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Query:  DPSPPRRKVKFAPKSSQ-RKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEP
        D    + K +F P   +  +R P  P   TE E+ E  +  +R   RR    +G+R     K SS +VAF P    +  +IR++GVPK E+    +D+ P
Subjt:  DPSPPRRKVKFAPKSSQ-RKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEP

Query:  EVDEDEEFVLPVARDV---NEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA
                +LP    V    EDG+                   T+T  DY EPWDY+NSYYPT LPLR P SGD E LD+ EFG+   NR+YDEN++  A
Subjt:  EVDEDEEFVLPVARDV---NEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPA

Query:  LDLGLLD-ENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVA
         +LGL   ++++   + F++P  LP+ KQ++ AT K      RS    SS   +  + L  G MGK+L+YKSGA+KL++GD L+DVS G        VVA
Subjt:  LDLGLLD-ENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVA

Query:  INSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL
        I+ +   C  +G     V VTPD+ SLLN  +++
Subjt:  INSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL

AT5G09380.1 RNA polymerase III RPC4

5.3e-38

36.06

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Query:  DPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPE
        +  PP RK+KFAPK+   KR P P V+    ED     AQ   LLRR NE   ++    +K  + QVA+  G               V N +R N     
Subjt:  DPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPE

Query:  VDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKR-DYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDL
                           KY ++        S+ +   T T+  +YKEPWDY  SYYP TLP+R PY+GDPE LD  EF Q      + E+S+  A +L
Subjt:  VDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKR-DYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDL

Query:  GLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINSE
        GL++++ E   +F +LP+ +PL      +T  E +    +          DLK L  G MGKLL+YKSGA+K++LG++LYDVS G    F Q V+ +N+E
Subjt:  GLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINSE

Query:  EGQCCDLGDIGNRVVVTPDISSLLNSVTNL
        +  CC +GD+    V+TPDI S+L  + N+
Subjt:  EGQCCDLGDIGNRVVVTPDISSLLNSVTNL

Sequences

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CDS sequence

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ATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAACTGAAGATGAAGA
TGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATCTTCAGTGCAAGTTGCATTCG
GTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAG
TTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGGAAACCAAGACCAA
GAGGGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGAACGACTTGATGAAGCCGAGTTTG
GGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGATGAAAACACAGAGAGTACTAAGTACTTCTTTCAGCTTCCT
GCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCGAGATCTTCAAACAGCACGAGCTCGTCCGATCTCGACGATTTGAAGAA
ACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTTTCTTCTGGATCAAACTGCAGTTTTC
TTCAACATGTTGTGGCAATCAACAGTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTG
ACTAATTTGAGATGA

mRNA sequence

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CGTCTTCGTTGGTATCTCATCATTTCTTCATTCCGCCTGGTCTAGGGTTCGATTCTTTCCCTTTTCTTCTTTTTCACCATTTTTGTCCCGTTTCCCTTCACCATCATCTT
CAACCTCGAGCTCATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAA
CTGAAGATGAAGATGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATCTTCAGTG
CAAGTTGCATTCGGTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGA
TGAAGATGAGGAGTTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGG
AAACCAAGACCAAGAGGGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGAACGACTTGAT
GAAGCCGAGTTTGGGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGATGAAAACACAGAGAGTACTAAGTACTT
CTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCGAGATCTTCAAACAGCACGAGCTCGTCCGATCTCG
ACGATTTGAAGAAACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTTTCTTCTGGATCA
AACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACAGTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCT
TTTAAATTCAGTGACTAATTTGAGATGATTGTGAAGAAAAAGCCTGTGGATAGAACAACCAACAAAAGAACACAACGAAGAAGGGCAAATCCTTACAATGTCAAAATGGG
ACTTTTACGTCTGGCTGTGTAGTGAAGGTGCTCATTTAGTAAGGAAGTTGGAGGGATGTCAAGTTCTTGTGTAATCTTTCTCCTTTGTTATTTCTATGGAAACAACAACG
TATTCAGTATCTTTGATTTCTAGCTGTGGAATAGGTTTTTACCCGATAATGTTGATAGTTGTTGTAAAGGACTTTTTGTATATAGTCTTTCTTGATGGTGGTAATATTAG
GATCCACACTTATCATGCA

Protein sequence

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MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEE
FVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLP
ARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINSEEGQCCDLGDIGNRVVVTPDISSLLNSV
TNLR

CSPI04G04000 (gene) of Cucumber (PI 183967) v1 genome