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CSPI04G04480 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G04480
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTetratricopeptide-like helical
Genome locationChr4:2914246..2914647
RNA-Seq ExpressionCSPI04G04480
SyntenyCSPI04G04480
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]1.2e-4686.07Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA
        MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYCF VDGSF GWR RD KADG   H ILGIF SLSKVIEKRA
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA

Query:  SNGMSSVRIIVRTILGFLMVMT
        SNGM+SVRIIVRTILGFLMVMT
Subjt:  SNGMSSVRIIVRTILGFLMVMT

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]4.2e-3669.63Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHG-HGILGIFCSLSKVIEK
        MSVSLEALAMAGI SNEWAMDAEEWERNEI+  VPPHLLADE+DD+D      TST+SNY FPV G F+  R  D    G H  H   GI CSLSK +EK
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHG-HGILGIFCSLSKVIEK

Query:  RASNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM
        RASNGMSSVRIIVRTILGFL+V  +KIISA  S M
Subjt:  RASNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-3669.4Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKR
        MSVSLEALAMAGI SNEWAMDAEEWERNEI+  VPPHLLADE+DD+D      TST+SNY FPV G F+     D  AD    H   GI CSLSK +EKR
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKR

Query:  ASNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM
        ASNGMSSVRIIVRTILGFL+V  +KIISA  S M
Subjt:  ASNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]4.6e-5186.47Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA
        MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYCF VDGSF GWR RD KADG     ILGIF SLSKVIEKRA
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA

Query:  SNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM
        SNGM+SVRIIVRTILGFLMVMTMKIISAQRSKM
Subjt:  SNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]7.7e-2250.36Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCS------LS
        MSVSLEALAMAGIDSNEWAMDAEEWERNE++  +PPHLLADE+D+ED                +   F   R   C+ D G G    G+ CS      L 
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCS------LS

Query:  KVIEKRASNGMSSVRIIVRTILGFLMVMTMKIISAQRSK
        K+ EKR  N +SS+ I+   ++GFLM MT+KII+++RSK
Subjt:  KVIEKRASNGMSSVRIIVRTILGFLMVMTMKIISAQRSK

TrEMBL top hitse value%identityAlignment
A0A0A0KWE7 Uncharacterized protein2.0e-68100Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA
        MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA

Query:  SNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM
        SNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM
Subjt:  SNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM

A0A5A7TS68 Tetratricopeptide-like helical5.7e-4786.07Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA
        MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYCF VDGSF GWR RD KADG   H ILGIF SLSKVIEKRA
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA

Query:  SNGMSSVRIIVRTILGFLMVMT
        SNGM+SVRIIVRTILGFLMVMT
Subjt:  SNGMSSVRIIVRTILGFLMVMT

A0A5D3CZU0 Tetratricopeptide-like helical2.2e-5186.47Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA
        MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYCF VDGSF GWR RD KADG     ILGIF SLSKVIEKRA
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRA

Query:  SNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM
        SNGM+SVRIIVRTILGFLMVMTMKIISAQRSKM
Subjt:  SNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM

A0A5N6Q1H5 Uncharacterized protein2.3e-0852.78Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLAD----EEDDEDGDEHVTTSTISNYCFPVDGSFE
        MS SLEALAMAG+D NEW MD EEWER ++   PPHL AD    +E D + DE V   T +N    + GS E
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLAD----EEDDEDGDEHVTTSTISNYCFPVDGSFE

A0A6J1FX98 uncharacterized protein LOC1114478803.7e-2250.36Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCS------LS
        MSVSLEALAMAGIDSNEWAMDAEEWERNE++  +PPHLLADE+D+ED                +   F   R   C+ D G G    G+ CS      L 
Subjt:  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCS------LS

Query:  KVIEKRASNGMSSVRIIVRTILGFLMVMTMKIISAQRSK
        K+ EKR  N +SS+ I+   ++GFLM MT+KII+++RSK
Subjt:  KVIEKRASNGMSSVRIIVRTILGFLMVMTMKIISAQRSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein2.8e-0653.85Show/hide
Query:  LEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLAD-------EEDDEDGDE
        +EALAMAG+D  EW +  EEWE  E  VVP HLLAD       EED +D D+
Subjt:  LEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLAD-------EEDDEDGDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTT
ATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAG
ATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATA
GTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTT
ATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAG
ATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATA
GTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRII
VRTILGFLMVMTMKIISAQRSKM