CuGenDBv2

Gene ID	CSPI04G05790
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A .
Genome location	Chr4:3925742..3929999
RNA-Seq Expression	CSPI04G05790
Synteny	CSPI04G05790
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019314 - BLOC-1-related complex subunit 6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146523.1 uncharacterized protein LOC101210623 [Cucumis sativus]

5.4e-72

100

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Query:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
        MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
Subjt:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES

Query:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

XP_008452025.1 PREDICTED: uncharacterized protein LOC103493156 [Cucumis melo]

1.1e-69

96.73

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Query:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
        MEQSPADSSTTSIETECQIPATSPNSTTSS +EDCTKTQSSLSQ QIL+AIEVVEKDSLA+AESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
Subjt:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES

Query:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

XP_022931514.1 uncharacterized protein LOC111437668 [Cucurbita moschata]

1.5e-58

84.18

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS +SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

XP_022984532.1 uncharacterized protein LOC111482798 [Cucurbita maxima]

3.4e-58

83.54

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS +SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEK+SLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

XP_023553161.1 uncharacterized protein LOC111810650 [Cucurbita pepo subsp. pepo]

6.9e-59

84.81

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS TSIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWT2 Uncharacterized protein

2.6e-72

100

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Query:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
        MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
Subjt:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES

Query:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

A0A1S3BTP0 uncharacterized protein LOC103493156

5.5e-70

96.73

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Query:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
        MEQSPADSSTTSIETECQIPATSPNSTTSS +EDCTKTQSSLSQ QIL+AIEVVEKDSLA+AESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES
Subjt:  MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQES

Query:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
Subjt:  VLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

A0A6J1C7Z8 uncharacterized protein LOC111008257 isoform X2

8.2e-50

75.32

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        M+Q+ AD ST   + + QIP TSPNST     T SV+ED TK++  L Q +I KAIEVVEKDSLA+AESFTSLFASLRS LSE + NSIDHMHCF+DAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
         LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQLKVLRKNVD LD AVNKLL+FP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

A0A6J1EUG1 uncharacterized protein LOC111437668

7.4e-59

84.18

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS +SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

A0A6J1J2E9 uncharacterized protein LOC111482798

1.7e-58

83.54

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Query:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS +SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEK+SLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPADSSTTSIETECQIPATSPNST-----TSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G23330.1 BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1)

1.2e-24

72.15

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Query:  SSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRL
        SSL+Q +ILK +  VEKDS A+AESF+SLF SLRS LSE T +S+DHM CF +AAGRLQE+ LDAATKGNRYINS LRL
Subjt:  SSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRL

AT4G23330.2 unknown protein

2.5e-38

71.93

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Query:  SSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNV
        SSL+Q +ILK +  VEKDS A+AESF+SLF SLRS LSE T +S+DHM CF +AAGRLQE+ LDAATKGNRYINS LRLN+E+KG++NLAA+LK LRKNV
Subjt:  SSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKVLRKNV

Query:  DELDLAVNKLLNFP
        D LD AVNKLL  P
Subjt:  DELDLAVNKLLNFP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGCAATCTCCGGCGGATTCTTCGACGACGAGTATCGAAACTGAATGTCAGATTCCAGCGACATCCCCAAATTCGACCACTTCTTCTGTCATTGAAGATTGCACCAA
AACCCAATCTTCTTTGAGCCAAGCCCAGATTCTCAAAGCCATTGAAGTCGTTGAGAAGGACTCTCTCGCCATGGCTGAGAGCTTCACCTCTCTCTTTGCTTCCCTGCGCT
CTGTTCTCTCCGAGGTCACCAGCAACTCGATTGATCATATGCATTGCTTCAACGATGCAGCAGGCCGCCTTCAAGAATCTGTGCTTGATGCGGCAACAAAGGGCAATCGA
TACATTAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATGGATAATCTAGCTGCTCAGCTAAAGGTTTTGAGGAAGAACGTGGATGAACTTGACTTGGCTGTGAA
CAAGCTCCTTAATTTTCCATGA

mRNA sequence

Show/hide mRNA sequence

AAATCATATAATCAAAACCTATTTATCGAAGCTATATGGATAGAAATCTCTAAATTTAGTACTAAAAAAACATCCCTAAATTGAACTACCAACACCAACCCATTTATTGA
ACTTCACAAAAGAAACTAAAATCTAACCACCAATGAATTACTAAGAGAAGCGCTTTGTTGGAGCAATGGCCTGATCCCAATGGGAACTCAAAAGAATCCCAATTTTGGAA
TTCATTTTCAAAACTCATCGAGAAATGGAGCAATCTCCGGCGGATTCTTCGACGACGAGTATCGAAACTGAATGTCAGATTCCAGCGACATCCCCAAATTCGACCACTTC
TTCTGTCATTGAAGATTGCACCAAAACCCAATCTTCTTTGAGCCAAGCCCAGATTCTCAAAGCCATTGAAGTCGTTGAGAAGGACTCTCTCGCCATGGCTGAGAGCTTCA
CCTCTCTCTTTGCTTCCCTGCGCTCTGTTCTCTCCGAGGTCACCAGCAACTCGATTGATCATATGCATTGCTTCAACGATGCAGCAGGCCGCCTTCAAGAATCTGTGCTT
GATGCGGCAACAAAGGGCAATCGATACATTAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATGGATAATCTAGCTGCTCAGCTAAAGGTTTTGAGGAAGAACGT
GGATGAACTTGACTTGGCTGTGAACAAGCTCCTTAATTTTCCATGAGCTCCACTCGGTCGTATCGTGGCTCTTGCAAGCTCAAGGATTTTTATTTCCACCAAAGAGAAAA
TACAGTTCATGAAGAAAAAAATATTCATTCCATAGCTTCCTTCACATTTTACTCTAGGAAGCATCTCATTGCATGTTAGGTTCTTTGATGTATTTATCCAGAAATAGATT
TTCTTGATTGCTTAATAATATATACTGGTTTGTGGTTTCAATAGTTATAATGGTCTCTTTTCCTTGGAGGCTATTCAG

Protein sequence

Show/hide protein sequence

MEQSPADSSTTSIETECQIPATSPNSTTSSVIEDCTKTQSSLSQAQILKAIEVVEKDSLAMAESFTSLFASLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNR
YINSSLRLNQEMKGMDNLAAQLKVLRKNVDELDLAVNKLLNFP

CSPI04G05790 (gene) of Cucumber (PI 183967) v1 genome