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CSPI04G05850 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G05850
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionnuclear transcription factor Y subunit C-1-like
Genome locationChr4:3962012..3962784
RNA-Seq ExpressionCSPI04G05850
SyntenyCSPI04G05850
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577185.1 hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sororia]1.0e-4686.61Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ATPAATGDLGEV
         T A+     E+
Subjt:  ATPAATGDLGEV

XP_004146566.1 nuclear transcription factor Y subunit C-3 [Cucumis sativus]2.3e-54100Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ATPAATGDLGE
        ATPAATGDLGE
Subjt:  ATPAATGDLGE

XP_008452022.1 PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo]4.4e-5095.5Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ATPAATGDLGE
        A  A  GD+GE
Subjt:  ATPAATGDLGE

XP_023552994.1 nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]8.4e-4991.15Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ATPAAT--GDLGE
         TPAA+  GDL E
Subjt:  ATPAAT--GDLGE

XP_038877432.1 nuclear transcription factor Y subunit C-1-like [Benincasa hispida]3.4e-5093.91Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  AT----PAATGDLGE
        AT     AA GDL E
Subjt:  AT----PAATGDLGE

TrEMBL top hitse value%identityAlignment
A0A0A0KZN6 CBFD_NFYB_HMF domain-containing protein1.1e-54100Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ATPAATGDLGE
        ATPAATGDLGE
Subjt:  ATPAATGDLGE

A0A1S3BSA0 nuclear transcription factor Y subunit C-1-like2.2e-5095.5Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ATPAATGDLGE
        A  A  GD+GE
Subjt:  ATPAATGDLGE

A0A5A7TSI3 Nuclear transcription factor Y subunit C-1-like2.2e-5095.5Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ATPAATGDLGE
        A  A  GD+GE
Subjt:  ATPAATGDLGE

A0A6J1EZM2 nuclear transcription factor Y subunit C-4-like5.0e-4786.61Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ATPAATGDLGEV
         T A+     E+
Subjt:  ATPAATGDLGEV

A0A6J1J883 nuclear transcription factor Y subunit C-4-like6.5e-4787.07Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELTKRSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ATPA-----ATGDLGE
         T A     A GDL E
Subjt:  ATPA-----ATGDLGE

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-21.2e-2158.06Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG
        H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A ++K+R L + DVA+AI  TDVFDFL+ ++  E A       LG
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG

Q8L4B2 Nuclear transcription factor Y subunit C-91.0e-2053.26Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDL
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E       G +
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDL

Q9FMV5 Nuclear transcription factor Y subunit C-43.4e-2162.2Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

Q9SMP0 Nuclear transcription factor Y subunit C-17.7e-2163.29Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

Q9ZVL3 Nuclear transcription factor Y subunit C-33.4e-2153.76Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E       G +G
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG

Arabidopsis top hitse value%identityAlignment
AT1G54830.1 nuclear factor Y, subunit C32.4e-2253.76Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E       G +G
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG

AT1G54830.2 nuclear factor Y, subunit C32.4e-2253.76Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E       G +G
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG

AT1G54830.3 nuclear factor Y, subunit C32.4e-2253.76Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E       G +G
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG

AT5G63470.1 nuclear factor Y, subunit C42.4e-2262.2Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

AT5G63470.2 nuclear factor Y, subunit C42.4e-2262.2Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAAGCGGGGGCATATTCCGGCGTGATGTACTGGAAAACAGGACCACACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAA
GATGATCTCCGGTGAGGCTCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGC
TTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCTACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCACTCCCGCCGCCACCGGAGATCTTGGT
GAAGTGAAACTATTTCGGTAG
mRNA sequenceShow/hide mRNA sequence
TAATTATCATAAACCTTCCCTTAATCATGATTCCATTTGTTAAAATAAACAAAAAAAAAAGTGTTAATTAGACTGAGTAACCTTAATCGGAGGAGCAGGCTGGCCGGCCG
CAGTAGCATTCCAATTTCCACAACCTCTATAAATTCACAATCCTCCTTTCATGAATCTTCAATAGAAATCTCGAAGAATCTCCGGCTGTTTTCCGATCCAATGAGGCAAG
CGGGGGCATATTCCGGCGTGATGTACTGGAAAACAGGACCACACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAAGATGATCTCC
GGTGAGGCTCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCATAAAGA
GGATGTGGCTTCCGCTATTCTGGCTACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCACTCCCGCCGCCACCGGAGATCTTGGTGAAGTGAAAC
TATTTCGGTAGGTTGTTGAAACTTAAAAGAATGGATTGAAGTGTTCTCCATTTCTCTCTGTTTGGAGTGAATTGAAATTTCAATTTGTCAATCTATGATAAAATGTAAAA
TATGATTCTCATATCTGTGGTTCCATTTATAACAAACAATTTCAGTTATGTCTTTCTCTCCCACTTAAATTATCAAAACAATCATACTCAAAAAATTTCAATGTATCGTA
ATG
Protein sequenceShow/hide protein sequence
MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLG
EVKLFR