CuGenDBv2

Gene ID	CSPI04G06920
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	embryo defective 3006
Genome location	Chr4:4831010..4835841
RNA-Seq Expression	CSPI04G06920
Synteny	CSPI04G06920
Gene Ontology terms	GO:0007049 - cell cycle (biological process) GO:0007059 - chromosome segregation (biological process) GO:0051301 - cell division (biological process) GO:0000818 - nuclear MIS12/MIND complex (cellular component)
InterPro domains	IPR007128 - Nuclear MIS12/MIND complex subunit PMF1/Nnf1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008451872.1 PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo]

1.6e-77

93.33

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Query:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
        MG+KHE+D PV+SRQIDLKKSFKLAVR LLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQDLDPL
Subjt:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL

Query:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
        YSKKTNIVEISNFLSM K EEIQHLKDMLKTAEEQN VIQGRID LRKGVQDASGMADAVKKLR+
Subjt:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN

XP_011653244.1 uncharacterized protein LOC101212745 [Cucumis sativus]

1.3e-84

99.39

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Query:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
        MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
Subjt:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL

Query:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
        YSKKTNIVEI NFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
Subjt:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN

XP_022931290.1 uncharacterized protein LOC111437518 isoform X1 [Cucurbita moschata]

9.0e-73

87.88

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Query:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
        M +KHE+  PVSS QIDLKKSFKLAVR LLTSCSREEFRECFSRFTTAEQ+YLHRLFIQVITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQDLDPL
Subjt:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL

Query:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
        YSKKTNI+EI+N+LSMTKK EIQHLKDMLKTAEEQN  +QGRID LRKGVQDAS M DAV+KLRN
Subjt:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN

XP_022985332.1 uncharacterized protein LOC111483373 isoform X1 [Cucurbita maxima]

1.7e-71

86.67

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Query:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
        M +KHE+  PVSS QIDLKKSFKLAVR LLTSCSR EFRECFSRFTTAEQ+YLHRLFIQVITSLHGNIEDEFESLCVET+VGLV DNVEQLLEEQDLDPL
Subjt:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL

Query:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
        YSKKTNI+EI+N+LSMTKK EIQHLKDMLKTAEEQN  +QGRID LRKGVQDAS M DAV+KLRN
Subjt:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN

XP_038876216.1 uncharacterized protein LOC120068468 [Benincasa hispida]

1.7e-71

87.8

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Query:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
        M +K E+D PVSS QIDLKKSFKLAVR LLTSCSREEFRECFS+FT AEQ+YLHRLFIQVITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQ+LDPL
Subjt:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL

Query:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLR
        YSKKTNI+EI+NFLS+TKK EIQHLKDMLKTAEEQN +IQGRID LRKGVQDAS MADAVKKLR
Subjt:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV94 Uncharacterized protein

6.5e-85

99.39

Show/hide

Query:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
        MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
Subjt:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL

Query:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
        YSKKTNIVEI NFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
Subjt:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN

A0A1S3BTB0 uncharacterized protein LOC103493030

7.7e-78

93.33

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Query:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
        MG+KHE+D PV+SRQIDLKKSFKLAVR LLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQDLDPL
Subjt:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL

Query:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
        YSKKTNIVEISNFLSM K EEIQHLKDMLKTAEEQN VIQGRID LRKGVQDASGMADAVKKLR+
Subjt:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN

A0A5A7TAS4 Uncharacterized protein

7.7e-78

93.33

Show/hide

Query:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
        MG+KHE+D PV+SRQIDLKKSFKLAVR LLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQDLDPL
Subjt:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL

Query:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
        YSKKTNIVEISNFLSM K EEIQHLKDMLKTAEEQN VIQGRID LRKGVQDASGMADAVKKLR+
Subjt:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN

A0A6J1EZ15 uncharacterized protein LOC111437518 isoform X1

4.4e-73

87.88

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Query:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
        M +KHE+  PVSS QIDLKKSFKLAVR LLTSCSREEFRECFSRFTTAEQ+YLHRLFIQVITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQDLDPL
Subjt:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL

Query:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
        YSKKTNI+EI+N+LSMTKK EIQHLKDMLKTAEEQN  +QGRID LRKGVQDAS M DAV+KLRN
Subjt:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN

A0A6J1J4K9 uncharacterized protein LOC111483373 isoform X1

8.3e-72

86.67

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Query:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL
        M +KHE+  PVSS QIDLKKSFKLAVR LLTSCSR EFRECFSRFTTAEQ+YLHRLFIQVITSLHGNIEDEFESLCVET+VGLV DNVEQLLEEQDLDPL
Subjt:  MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPL

Query:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
        YSKKTNI+EI+N+LSMTKK EIQHLKDMLKTAEEQN  +QGRID LRKGVQDAS M DAV+KLRN
Subjt:  YSKKTNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G19350.1 embryo defective 3006

2.5e-36

49.69

Show/hide

Query:  HELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKK
        HE D    SR+  LKKSFK  +R LLT+CS+++F + FS+F+ AEQ+ L +L+ +V+ +LH  IE+EF+  C ETQVG + D VE+L+EEQ LDPL+S K
Subjt:  HELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKK

Query:  TNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKL
        T+++ I+  L+ +KK EIQ L  +L+ AEEQN   + RI  L+K  QD SG AD ++KL
Subjt:  TNIVEISNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGGGAGAAGCACGAGCTTGATGCTCCGGTGAGCTCCAGACAGATCGATCTGAAGAAGTCCTTCAAGCTTGCTGTTCGTCCTCTCCTTACTTCCTGTTCCAGGGAGGA
GTTTCGGGAATGCTTTTCGAGATTTACGACTGCAGAGCAAGATTATCTTCATCGTCTTTTCATTCAGGTTATAACTTCTCTTCATGGAAACATAGAGGACGAGTTTGAGT
CATTATGTGTTGAAACACAGGTGGGACTTGTATTTGATAATGTTGAACAACTTTTGGAAGAGCAAGATCTAGACCCATTGTATTCAAAGAAGACCAATATAGTGGAAATA
TCTAATTTTCTGTCCATGACAAAGAAGGAGGAGATCCAACACTTGAAGGACATGCTAAAAACGGCTGAGGAACAGAACTGGGTTATTCAAGGCCGTATTGATGATTTAAG
GAAAGGAGTGCAAGATGCCTCTGGCATGGCAGATGCTGTTAAAAAGCTAAGAAACTAA

mRNA sequence

Show/hide mRNA sequence

GAATTTTCGGACTTCAATTTCTTTGTCAGCTTGCCGTTCCTCTATTCGTCGCCGCCAATCGACGGCACTGACGGGGCTCAACTCACCAACTCGTTTCACTTACAGCCGCT
TTCGAATTTCTTCTTCCCGTCGCTGTTCCGCCATTTTTATCAAGTTTAATGTCAGCGCAGATTTTAGCAAGATAGGGTTGGGAATCGTAGTGTACAAAAATTTTGAATAT
GGGGGAGAAGCACGAGCTTGATGCTCCGGTGAGCTCCAGACAGATCGATCTGAAGAAGTCCTTCAAGCTTGCTGTTCGTCCTCTCCTTACTTCCTGTTCCAGGGAGGAGT
TTCGGGAATGCTTTTCGAGATTTACGACTGCAGAGCAAGATTATCTTCATCGTCTTTTCATTCAGGTTATAACTTCTCTTCATGGAAACATAGAGGACGAGTTTGAGTCA
TTATGTGTTGAAACACAGGTGGGACTTGTATTTGATAATGTTGAACAACTTTTGGAAGAGCAAGATCTAGACCCATTGTATTCAAAGAAGACCAATATAGTGGAAATATC
TAATTTTCTGTCCATGACAAAGAAGGAGGAGATCCAACACTTGAAGGACATGCTAAAAACGGCTGAGGAACAGAACTGGGTTATTCAAGGCCGTATTGATGATTTAAGGA
AAGGAGTGCAAGATGCCTCTGGCATGGCAGATGCTGTTAAAAAGCTAAGAAACTAATGCAGATCTTATGGAACTGATGGTGTTAATGAGACCTTCGATATACTTAACTGA
TGCTGTTAAATAGCAAGGTCAGTATGTAATTTAGTAGATTATACTTGGGTAGTTATGTGTGTCAATTTCCTCAGCTTAGCTCAAGCTTTATATTTACTTCTTATTTCATG
TTTGCAATTATACATGTTTTCTTCTGACTAATGCATACAATCTATCTTGTTGTATCAAAGAATTGTTCAATGCCCCATCAAGAATTAGCTATGTCGTTGGAACTCTATAT
TGCCCTTGTTTCTTTCTCCACTCTCTCTAGGGAC

Protein sequence

Show/hide protein sequence

MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEI
SNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN

CSPI04G06920 (gene) of Cucumber (PI 183967) v1 genome