; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G07240 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G07240
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA-binding protein HEXBP-like
Genome locationChr4:5093147..5096556
RNA-Seq ExpressionCSPI04G07240
SyntenyCSPI04G07240
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR010666 - Zinc finger, GRF-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649235.1 hypothetical protein Csa_015059 [Cucumis sativus]6.2e-12699.12Show/hide
Query:  MKSSSLQWRTAAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLG
        MKSSSLQWRTAAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGT IAPYKGSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLG
Subjt:  MKSSSLQWRTAAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLG

Query:  HWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSFSDLQCPCGAG
        HWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSFSDLQCPCGAG
Subjt:  HWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSFSDLQCPCGAG

Query:  SCKILTAKTGNNVGKQFYCCPSSQAS
        SCKILTAKTGNNVGKQFYCCPSSQ S
Subjt:  SCKILTAKTGNNVGKQFYCCPSSQAS

XP_004147743.1 DNA topoisomerase 3-alpha [Cucumis sativus]1.7e-18799.69Show/hide
Query:  MKSSSLQWRTAAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLG
        MKSSSLQWRTAAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGT IAPYKGSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLG
Subjt:  MKSSSLQWRTAAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLG

Query:  HWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSFSDLQCPCGAG
        HWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSFSDLQCPCGAG
Subjt:  HWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSFSDLQCPCGAG

Query:  SCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGR
        SCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGR
Subjt:  SCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGR

Query:  SQSSSAGSCFKCGMPGHWARDCSNFEK
        SQSSSAGSCFKCGMPGHWARDCSNFEK
Subjt:  SQSSSAGSCFKCGMPGHWARDCSNFEK

XP_022984959.1 cold shock domain-containing protein 3-like [Cucurbita maxima]6.7e-11267.71Show/hide
Query:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSR-ALSQISGSEASSDKNVSIYENTT--AQSEGDGSCFKCGKLGHWARDCD
        AAE  +L  K R +PN TI+ PK A+AEV++KV  N D  G  IA  KG    LSQ+SG  A+S     I  NTT  AQS+G GSCFKCGKLGHWARDCD
Subjt:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSR-ALSQISGSEASSDKNVSIYENTT--AQSEGDGSCFKCGKLGHWARDCD

Query:  APGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQN-PLSSSFSDLQCPCGAGSCKILT
        APG GGSFS+S ND SV +K+CPCG G+C VLTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS  N+++YGSQN   SSSFSDL+CPCGAGSC  LT
Subjt:  APGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQN-PLSSSFSDLQCPCGAGSCKILT

Query:  AKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQS-PSSSTSPAEYGRSQSSS
        AKTG NVG+QFY CPS QA+C FF+WC+EPSM  KNQ S  KVYGNT DTSK      +  + SS YK G EGHWARD SQS   S+  PAE+GR+QSSS
Subjt:  AKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQS-PSSSTSPAEYGRSQSSS

Query:  AGSCFKCGMPGHWARDCSN
        AGSCFKCG PGHWARDCSN
Subjt:  AGSCFKCGMPGHWARDCSN

XP_023552737.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]6.1e-11368.97Show/hide
Query:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSR-ALSQISGSEASSDKNVSIYENTT--AQSEGDGSCFKCGKLGHWARDCD
        AAE  +L  K R +PN TID PK AVAEV+ KV  NAD  G  IA  KG    LSQ+SG  A+S     I  NTT  AQSEG GSCFKCGKLGHWARDCD
Subjt:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSR-ALSQISGSEASSDKNVSIYENTT--AQSEGDGSCFKCGKLGHWARDCD

Query:  APGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQN-PLSSSFSDLQCPCGAGSCKILT
        APG GGSFS+SGND SV +K+CPCG G+C VLTANTERNRGRKFYKC VRQENGGCGFFEWCD+AS  N+++YGSQN   SSSFSDL+CPCGAGSC  LT
Subjt:  APGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQN-PLSSSFSDLQCPCGAGSCKILT

Query:  AKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQS-PSSSTSPAEYGRSQSSS
        AKTG+NVG+QFY CPS QA+C FF+WC+EPSM  KNQ S  KVYGNT DTSK      +  + SS YK G EGHWARD SQS   S+  PAE+GR+QSSS
Subjt:  AKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQS-PSSSTSPAEYGRSQSSS

Query:  AGSCFKCGMPGHWARDCSN
        AGSCFKCG PGHWARDCSN
Subjt:  AGSCFKCGMPGHWARDCSN

XP_038903890.1 cold shock domain-containing protein 3-like [Benincasa hispida]1.0e-12071.84Show/hide
Query:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSR-ALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLGHWARDCDAP
        AAE V+L  K R +PN  ID PKNAVAEVS K+PLNA+  G  IA  KG+   LSQISG + +S    SI  NTTAQSEG GSCFKCGKLGHWARDCDAP
Subjt:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSR-ALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLGHWARDCDAP

Query:  GGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQN-PLSSSFSDLQCPCGAGSCKILTAK
        GGGGSFS+SGND SV +KACPCG G+CS+LTANTERNRGRKFYKCPVRQENGGCGFFEWCDS  V  +++YGSQN   SSSFSD+QCPCGAGSC ILTAK
Subjt:  GGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQN-PLSSSFSDLQCPCGAGSCKILTAK

Query:  TGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGRSQSSSAGS
        TG NVG+QFY CPS QA+C FF+WC+EPSM TKNQ S  KVY NT+D SKS  + V+T SSSS YK G EGHWARD SQS  +S +P E+GRSQSSS G+
Subjt:  TGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGRSQSSSAGS

Query:  CFKCGMPGHWARDCSN
        CFKCG PGHWARDC+N
Subjt:  CFKCGMPGHWARDCSN

TrEMBL top hitse value%identityAlignment
A0A0A0KVB6 Uncharacterized protein8.1e-18899.69Show/hide
Query:  MKSSSLQWRTAAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLG
        MKSSSLQWRTAAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGT IAPYKGSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLG
Subjt:  MKSSSLQWRTAAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLG

Query:  HWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSFSDLQCPCGAG
        HWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSFSDLQCPCGAG
Subjt:  HWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSFSDLQCPCGAG

Query:  SCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGR
        SCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGR
Subjt:  SCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGR

Query:  SQSSSAGSCFKCGMPGHWARDCSNFEK
        SQSSSAGSCFKCGMPGHWARDCSNFEK
Subjt:  SQSSSAGSCFKCGMPGHWARDCSNFEK

A0A1S4DYV0 DNA-binding protein HEXBP-like2.8e-10379.75Show/hide
Query:  GSCFKCGKLGHWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSF
        G+CFKCGKLGHWARDCDAPGGGGSF+SSGND+SV +KA PCGSG+C VLTANTERNRGRKFY+C VRQENGGCGFFEWCDSA          QNPLSSSF
Subjt:  GSCFKCGKLGHWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSF

Query:  SDLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPS
         DLQCPCGAGSC+ILTAK+ NNVGKQFYCCPSSQ SCRFF+WCEEPS+ETKNQ S PKVY   ND SKS T NVKTSSSSS YK G EGHWARD SQS S
Subjt:  SDLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPS

Query:  SSTSPAEYGRSQSSSAGSCFKCGMPGHWARDCSNFEK
         S  PA YGRSQSSS GSCFKCG PGHWA+DCSN EK
Subjt:  SSTSPAEYGRSQSSSAGSCFKCGMPGHWARDCSNFEK

A0A6J1C4N6 DNA-binding protein HEXBP-like6.1e-10363.39Show/hide
Query:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSRAL-SQISGSEASS-DKNVS------IYENTTAQSEGDGSCFKCGKLGHW
        AAE  +L  K R +PN TID PK A+AE            G  +A  +G   L SQISG  A+S  K V+      +  N TAQSEG GSCFKCGKLGHW
Subjt:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSRAL-SQISGSEASS-DKNVS------IYENTTAQSEGDGSCFKCGKLGHW

Query:  ARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSS-FSDLQCPCGAGS
        ARDCDAPGGGGSF ++G D SV +KACPCG G+C VLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSAS  NV++YGSQN  SSS FSDL CPCGAGS
Subjt:  ARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSS-FSDLQCPCGAGS

Query:  CKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSS------------SSSYKYGSEGHWARDWSQSP
        C ILTAKTG NVG+QFY CPS Q SC FF+WC+EP M TKNQ +  K+YGN NDTSKS     +TSSS            SS YK G EGHWARD SQS 
Subjt:  CKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSS------------SSSYKYGSEGHWARDWSQSP

Query:  SSSTSP-AEYGRSQSSSAGSCFKCGMPGHWARDCSN
        +SS  P AE GR+ S+S G+CFKC  PGHWARDC N
Subjt:  SSSTSP-AEYGRSQSSSAGSCFKCGMPGHWARDCSN

A0A6J1EZ11 cold shock domain-containing protein 3-like9.8e-10967.3Show/hide
Query:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSR-ALSQISGSEASSDKNVSIYENTT--AQSEGDGSCFKCGKLGHWARDCD
        AAE  +L  K R +PN TID PK A+AEV+ KV  NAD  G  IA  KG    LSQ+SG  A+S     I  NTT  AQSEG GSCFKCGKLGHWARDCD
Subjt:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSR-ALSQISGSEASSDKNVSIYENTT--AQSEGDGSCFKCGKLGHWARDCD

Query:  APGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQN-PLSSSFSDLQCPCGAGSCKILT
        APG GGSFS SGND SV +K+CPCG G+C VLTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS  N+++YGSQN   SSSFSDL+CPCGAGSC  LT
Subjt:  APGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQN-PLSSSFSDLQCPCGAGSCKILT

Query:  AKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGRSQSSSA
        AKTG NVG+QFY CPS QA+C FF+WC+E SM  KNQ S  KVYGNT DTSK      +  + SS YK G EGHWARD SQS + S        +QSSSA
Subjt:  AKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGRSQSSSA

Query:  GSCFKCGMPGHWARDCSN
        GSCFKCG PGHWARDCSN
Subjt:  GSCFKCGMPGHWARDCSN

A0A6J1JBZ0 cold shock domain-containing protein 3-like3.2e-11267.71Show/hide
Query:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSR-ALSQISGSEASSDKNVSIYENTT--AQSEGDGSCFKCGKLGHWARDCD
        AAE  +L  K R +PN TI+ PK A+AEV++KV  N D  G  IA  KG    LSQ+SG  A+S     I  NTT  AQS+G GSCFKCGKLGHWARDCD
Subjt:  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSR-ALSQISGSEASSDKNVSIYENTT--AQSEGDGSCFKCGKLGHWARDCD

Query:  APGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQN-PLSSSFSDLQCPCGAGSCKILT
        APG GGSFS+S ND SV +K+CPCG G+C VLTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS  N+++YGSQN   SSSFSDL+CPCGAGSC  LT
Subjt:  APGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQN-PLSSSFSDLQCPCGAGSCKILT

Query:  AKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQS-PSSSTSPAEYGRSQSSS
        AKTG NVG+QFY CPS QA+C FF+WC+EPSM  KNQ S  KVYGNT DTSK      +  + SS YK G EGHWARD SQS   S+  PAE+GR+QSSS
Subjt:  AKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQS-PSSSTSPAEYGRSQSSS

Query:  AGSCFKCGMPGHWARDCSN
        AGSCFKCG PGHWARDCSN
Subjt:  AGSCFKCGMPGHWARDCSN

SwissProt top hitse value%identityAlignment
C7J0A2 DNA topoisomerase 3-alpha2.8e-0462.86Show/hide
Query:  CSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCD
        C + TANTE NRGRKFYKC    +N  CGFF W D
Subjt:  CSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCD

Q9LVP1 DNA topoisomerase 3-alpha9.7e-0535.04Show/hide
Query:  GSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLGHWARDCDA--PGGGGSFSSSGNDMSVPDK-AC-PCGSGICSVLTANTERNRGRKFYKC
        GSR+ ++ +   A S+   +I  + T QS     C  C + GH + +C +  P    S  ++ N  +     +C  CGS  C + TANTE NRGR+F+ C
Subjt:  GSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLGHWARDCDA--PGGGGSFSSSGNDMSVPDK-AC-PCGSGICSVLTANTERNRGRKFYKC

Query:  PVRQENGGCGFFEWCDS
        P +    GC FF W DS
Subjt:  PVRQENGGCGFFEWCDS

Q9NG98 DNA topoisomerase 3-alpha1.8e-0624.87Show/hide
Query:  SVPDKACPCGSGICSVLTANTER----NRGRKFYKCPVRQENGGCGFFEWCD------------SASVANVVSYGS-----------------QNPLSSS
        SVP+      +G       NT R    N GR +YKCP   E   C FF+W D             ++  +  S+GS                 Q+ + S+
Subjt:  SVPDKACPCGSGICSVLTANTER----NRGRKFYKCPVRQENGGCGFFEWCD------------SASVANVVSYGS-----------------QNPLSSS

Query:  FS------------------------DLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTN
         S                        ++ C CG  + ++   K G N G+ FY CP+ + SC FF+W +    E +NQ ++   +G+ N
Subjt:  FS------------------------DLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTN

Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein1.6e-0745.45Show/hide
Query:  DLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEE
        D+ CPC AG C  +T+KT  N  ++FY CP    SC +F+WC++
Subjt:  DLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEE

AT3G42860.1 zinc knuckle (CCHC-type) family protein7.5e-5349.32Show/hide
Query:  GGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDS-----ASVANVVSYGSQNPLSSSFSDLQCPCGAGSCKI
        GGGG       +   P+K+CPCG GIC +LT+NT +N GRKFYKCP R+ENGGCGFF+WCD+      S     SYG+ N   + F D QCPCGAG C++
Subjt:  GGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDS-----ASVANVVSYGSQNPLSSSFSDLQCPCGAGSCKI

Query:  LTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGRSQSS
        LTAKTG NVG+QFY CP  + SC FF+WC +  + +    S  K   N  D+      N KT   +  YK G EGHWARD   +  S T P +     +S
Subjt:  LTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGRSQSS

Query:  SAGSCFKCGMPGHWARDCS
        +AG CFKCG PGHW+RDC+
Subjt:  SAGSCFKCGMPGHWARDCS

AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain7.6e-0558.82Show/hide
Query:  GDGSCFKCGKLGHWARDCDAPGGG-----GSFSS
        G+  CFKCG++GHWARDC + GGG     G FSS
Subjt:  GDGSCFKCGKLGHWARDCDAPGGG-----GSFSS

AT5G13920.1 GRF zinc finger / Zinc knuckle protein8.4e-2035.21Show/hide
Query:  GSCFKCGKLGHWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSF
        G CF+C + GHW  DC           S  D   P   CPCG G C +  ANT  N GRKFYKCP  Q    C FF+WCD  +  ++           +F
Subjt:  GSCFKCGKLGHWARDCDAPGGGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSF

Query:  SDLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRW
        +   C CGAG C+ +   +G        C      +C FF+W
Subjt:  SDLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRW

AT5G63920.1 topoisomerase 3alpha6.9e-0635.04Show/hide
Query:  GSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLGHWARDCDA--PGGGGSFSSSGNDMSVPDK-AC-PCGSGICSVLTANTERNRGRKFYKC
        GSR+ ++ +   A S+   +I  + T QS     C  C + GH + +C +  P    S  ++ N  +     +C  CGS  C + TANTE NRGR+F+ C
Subjt:  GSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLGHWARDCDA--PGGGGSFSSSGNDMSVPDK-AC-PCGSGICSVLTANTERNRGRKFYKC

Query:  PVRQENGGCGFFEWCDS
        P +    GC FF W DS
Subjt:  PVRQENGGCGFFEWCDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGTTCCTCTTTGCAGTGGCGGACAGCAGCTGAAGTTGTTTCCCTAGTCAAGAAAGTCAGAAATGTCCCTAACCCTACCATCGATCTCCCCAAAAATGCCGTTGC
GGAGGTTTCGCATAAAGTTCCCCTTAATGCAGACTTTTTAGGGACCTGCATCGCCCCTTATAAAGGAAGCCGTGCTCTCTCTCAAATTTCAGGCTCGGAAGCCAGTTCTG
ACAAAAATGTATCCATTTATGAAAATACTACTGCTCAATCGGAAGGCGATGGTTCGTGTTTCAAATGCGGGAAATTAGGGCATTGGGCTAGAGACTGCGATGCTCCGGGT
GGTGGAGGATCTTTCAGTTCTTCAGGAAATGATATGTCTGTTCCGGATAAAGCATGCCCCTGCGGATCGGGAATTTGTTCAGTATTAACTGCGAATACGGAGAGGAATCG
CGGTCGAAAATTTTACAAATGCCCCGTTCGGCAGGAAAATGGTGGCTGCGGATTCTTTGAGTGGTGTGACAGTGCCTCTGTAGCTAATGTAGTGTCTTATGGAAGCCAAA
ATCCATTAAGTTCGTCATTTTCAGACCTTCAGTGCCCCTGTGGTGCTGGTTCTTGCAAAATTCTAACAGCTAAAACAGGGAACAACGTTGGGAAGCAGTTCTATTGTTGC
CCTTCATCCCAGGCTTCTTGCAGGTTTTTCCGATGGTGCGAAGAGCCTTCCATGGAAACCAAGAATCAAGAAAGCACCCCTAAGGTCTACGGTAACACAAATGACACAAG
CAAAAGTGCTACCTTGAATGTGAAGACTAGTTCTTCCAGTTCCAGCTATAAATATGGGAGTGAAGGGCATTGGGCTAGAGACTGGTCGCAATCACCCTCATCTTCAACTT
CTCCTGCAGAGTATGGCAGAAGTCAATCTTCTTCAGCTGGAAGCTGTTTCAAATGTGGTATGCCTGGCCATTGGGCGAGGGACTGCTCTAATTTTGAAAAATAG
mRNA sequenceShow/hide mRNA sequence
GGCTGTTACTACACCAAAGGCCGGAAACGAAACCCTGACGCAAAATTTGAAACCTATTCCGATCAAGTGGACGAAGTTGGAATCCAAGACCAATTTTGATTTCCATCTCC
CAGAAGACGACGATGAAGAGTTCCTCTTTGCAGTGGCGGACAGCAGCTGAAGTTGTTTCCCTAGTCAAGAAAGTCAGAAATGTCCCTAACCCTACCATCGATCTCCCCAA
AAATGCCGTTGCGGAGGTTTCGCATAAAGTTCCCCTTAATGCAGACTTTTTAGGGACCTGCATCGCCCCTTATAAAGGAAGCCGTGCTCTCTCTCAAATTTCAGGCTCGG
AAGCCAGTTCTGACAAAAATGTATCCATTTATGAAAATACTACTGCTCAATCGGAAGGCGATGGTTCGTGTTTCAAATGCGGGAAATTAGGGCATTGGGCTAGAGACTGC
GATGCTCCGGGTGGTGGAGGATCTTTCAGTTCTTCAGGAAATGATATGTCTGTTCCGGATAAAGCATGCCCCTGCGGATCGGGAATTTGTTCAGTATTAACTGCGAATAC
GGAGAGGAATCGCGGTCGAAAATTTTACAAATGCCCCGTTCGGCAGGAAAATGGTGGCTGCGGATTCTTTGAGTGGTGTGACAGTGCCTCTGTAGCTAATGTAGTGTCTT
ATGGAAGCCAAAATCCATTAAGTTCGTCATTTTCAGACCTTCAGTGCCCCTGTGGTGCTGGTTCTTGCAAAATTCTAACAGCTAAAACAGGGAACAACGTTGGGAAGCAG
TTCTATTGTTGCCCTTCATCCCAGGCTTCTTGCAGGTTTTTCCGATGGTGCGAAGAGCCTTCCATGGAAACCAAGAATCAAGAAAGCACCCCTAAGGTCTACGGTAACAC
AAATGACACAAGCAAAAGTGCTACCTTGAATGTGAAGACTAGTTCTTCCAGTTCCAGCTATAAATATGGGAGTGAAGGGCATTGGGCTAGAGACTGGTCGCAATCACCCT
CATCTTCAACTTCTCCTGCAGAGTATGGCAGAAGTCAATCTTCTTCAGCTGGAAGCTGTTTCAAATGTGGTATGCCTGGCCATTGGGCGAGGGACTGCTCTAATTTTGAA
AAATAGGTACCGACTCTTTGGCTGCTTCGGCATTAAGCTGTTTCAAGGTGTTTAGCCGTTTAAGCTTTTAAATCCACAAGTGCTGAATATGTCATCTGGCATTTCTGTTT
ATTTGGTACACTCGCCTATTTTGAAGTACACTTTTGGGGATGATGTCTAGATGGATTAGCTTAGAATTGAGACTTTAGTATTGAGTCTCTTAAATTTGAATTTTTATCAT
TTAATCATCGATTATTTACTTATCTAAATATTATTAAAAGTAAGTTTAATTTAATTCTTTTTTTCTCATCTGTAGTATATATAAAAGAATGGAAGGAGTATATAAAAGGA
TGGGAGTGGAGTAATTTTTT
Protein sequenceShow/hide protein sequence
MKSSSLQWRTAAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTCIAPYKGSRALSQISGSEASSDKNVSIYENTTAQSEGDGSCFKCGKLGHWARDCDAPG
GGGSFSSSGNDMSVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLSSSFSDLQCPCGAGSCKILTAKTGNNVGKQFYCC
PSSQASCRFFRWCEEPSMETKNQESTPKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGRSQSSSAGSCFKCGMPGHWARDCSNFEK