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CSPI04G07380 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G07380
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationChr4:5225160..5227096
RNA-Seq ExpressionCSPI04G07380
SyntenyCSPI04G07380
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062951.1 photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa]1.1e-6394.93Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAAS+MTSVSLKPAPFTVEKSA GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

XP_004147752.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucumis sativus]7.3e-68100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]4.9e-6495.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]3.8e-6495.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKV ASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]8.4e-6494.93Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S  FKV ASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXH3 Photosystem II 10 kDa polypeptide, chloroplastic3.5e-68100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

A0A1S3BSD1 Photosystem II 10 kDa polypeptide, chloroplastic2.4e-6495.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

A0A5A7VB86 Photosystem II 10 kDa polypeptide, chloroplastic5.3e-6494.93Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAAS+MTSVSLKPAPFTVEKSA GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic2.4e-6495.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        TGDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic1.8e-6495.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKV ASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  TGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic7.4e-5581.29Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK S  GLPSLAR S SFKVVASG KK+KTDKPYGINGSM LRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-SASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        P+GDVYVGGTTGLAIWA TL G+LAGGALLVYNTSAL Q
Subjt:  PTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

P27202 Photosystem II 10 kDa polypeptide, chloroplastic3.4e-5278.57Show/hide
Query:  MAASVM-TSVSLKPAPFTVEKSAS-GLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK+A+ GLPSL R   SFK+VASG KKIKTDKP+GINGSM+LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEKSAS-GLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        S +GDVY GG TGLAIWA TLAG+LAGGALLVYNTSAL Q
Subjt:  SPTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

P49108 Photosystem II 10 kDa polypeptide, chloroplastic1.7e-5178.72Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SASGLPSLARKS-FSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD
        MAASVM +SV+LKPA FTVEK SA GLPSL R S  SF++VASG KKIKTDKP+G+NGSM+LRDG+DASGRKGKG GVY+FVDKYGANVDGYSPIY+  +
Subjt:  MAASVM-TSVSLKPAPFTVEK-SASGLPSLARKS-FSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD

Query:  WSPTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        WS +GDVY GG TGLAIWA TLAG+LAGGALLVYNTSAL Q
Subjt:  WSPTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic2.8e-5480.58Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK S  GLPSL R S SFKVVASG KK+KTDKPYGINGSM LRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-SASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        P+GDVYVGGTTGLAIWA TL G+LAGGALLVYNTSAL Q
Subjt:  PTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic5.7e-5581.29Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSA-SGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM   SLKPAPF+VEK+A  GLPSLAR S SF+V ASG KK+KTDKPYGINGSM+LRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIY+T DWS
Subjt:  MAASVMTSVSLKPAPFTVEKSA-SGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        P+GDVYVGGTTGLAIWA TL G+LAGGALLV+NTSAL Q
Subjt:  PTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R2.4e-5378.57Show/hide
Query:  MAASVM-TSVSLKPAPFTVEKSAS-GLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK+A+ GLPSL R   SFK+VASG KKIKTDKP+GINGSM+LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEKSAS-GLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ
        S +GDVY GG TGLAIWA TLAG+LAGGALLVYNTSAL Q
Subjt:  SPTGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCTCAGTTATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGCCAGTGGTCTTCCATCTCTGGCGAGAAAGTCCTTTTCCTTCAAGGT
CGTGGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGAATCAATGGTTCGATGAATTTGAGGGATGGACTTGATGCATCAGGAAGGAAGGGCAAGGGAAAGG
GAGTGTACCAATTTGTCGACAAGTACGGAGCCAACGTCGATGGTTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAACTGGTGATGTCTATGTTGGTGGTACTACT
GGGTTAGCCATTTGGGCAGCGACTTTGGCTGGTCTTCTTGCTGGAGGTGCTCTTCTCGTGTACAACACCAGTGCTTTGGTGCAGTAA
mRNA sequenceShow/hide mRNA sequence
GCATCTTTTCGAGCTAAACAAGAAGAAGAAGAGGAAGTAGAAGAAGAAGCTTATCGATCGGAAATGGCGGCCTCAGTTATGACCTCAGTGAGTCTTAAACCAGCTCCCTT
CACCGTCGAGAAATCGGCCAGTGGTCTTCCATCTCTGGCGAGAAAGTCCTTTTCCTTCAAGGTCGTGGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGAA
TCAATGGTTCGATGAATTTGAGGGATGGACTTGATGCATCAGGAAGGAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGAGCCAACGTCGATGGTTAC
AGTCCCATCTACGACACCAAAGACTGGTCTCCAACTGGTGATGTCTATGTTGGTGGTACTACTGGGTTAGCCATTTGGGCAGCGACTTTGGCTGGTCTTCTTGCTGGAGG
TGCTCTTCTCGTGTACAACACCAGTGCTTTGGTGCAGTAAGGGTTGGCACCGAGTTTGAAATCACTTTTTGGATAGAGTACTATTTTAGGTCAAATAACAATTCTTCTAT
ACTAATTAAAGCAGTTTTTGACTGTTTATTCTGAATTCAGGTGTAGTGTTTTTAGCTTAAAATATATACCCTTGATCGGAATGTTTAAATGTTCGAATTTCTTCCTCT
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTT
GLAIWAATLAGLLAGGALLVYNTSALVQ