; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G07700 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G07700
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionglycine-rich RNA-binding protein GRP2A-like
Genome locationChr4:5568221..5569072
RNA-Seq ExpressionCSPI04G07700
SyntenyCSPI04G07700
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063029.1 hypothetical protein E6C27_scaffold468G001370 [Cucumis melo var. makuwa]1.1e-7888.77Show/hide
Query:  IIGGGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTDARGFQTSEQSIFPDTRSSRRNER-SILPD
        +IGGGY+KKDA+ LPTPSVSIGRSRPLQTYRD+EFGQGIRTYRQDSTPRSE+SI  DTRGSQR  QSIF DARGFQTSEQSIFPDTRSSRRNE   ILPD
Subjt:  IIGGGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTDARGFQTSEQSIFPDTRSSRRNER-SILPD

Query:  TQSSRRSEQIDRQD-TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVGSNSCGNGSQL
        TQ SRRSE+IDRQD TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDG YVDNC DGTDG GVYGGG GSNSCGNGSQL
Subjt:  TQSSRRSEQIDRQD-TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVGSNSCGNGSQL

KAE8649249.1 hypothetical protein Csa_015081, partial [Cucumis sativus]3.4e-10498.6Show/hide
Query:  MLLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTD
        MLLDLKPSILIVIICTSLVVVAAILCCFCIIG GYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRG QSIFTD
Subjt:  MLLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTD

Query:  ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYG
        ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYG
Subjt:  ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYG

Query:  GGVGSNSCGNGSQL
        GGVGSNS GNGSQL
Subjt:  GGVGSNSCGNGSQL

KAG6600486.1 hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2342.29Show/hide
Query:  LLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSR------PLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQ
        + D+KPSI+I+IIC SL+    ILCC CII G  RK+  +  PTPS SI   R      P Q+Y D+E GQGIR +RQD T RSE+S+ SD  G+QR  Q
Subjt:  LLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSR------PLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQ

Query:  SIFTDARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSS------------YQGGEDIDG
          F   R            +RSS+ +E S+  D               + S  KDGGMAI AGAGAA+A AA  LGLSS            Y G   +  
Subjt:  SIFTDARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSS------------YQGGEDIDG

Query:  DYVDNCDDGTDGGGVYGGGVGSNSCGN
         Y D+C +G   GG  GGGV    CG+
Subjt:  DYVDNCDDGTDGGGVYGGGVGSNSCGN

XP_022942031.1 glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata]1.7e-2343.29Show/hide
Query:  LLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSR-------PLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGS
        + D+KPSI+I+IIC SL+    ILCC CII G  RK+  +  PTPS SI   R       P Q+Y D+E GQGIR YRQD T RSE+S+ SD  G+QR  
Subjt:  LLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSR-------PLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGS

Query:  QSIF-TD-ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGD--------
        Q  F TD +R  Q+SE S+  D RS                               KDGGMAI AGAGAA+A AA  LGLSS  GG++  G+        
Subjt:  QSIF-TD-ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGD--------

Query:  -----YVDNCDDGTDGGGVYGGGVGSNSCGN
             Y D+C +G   GG  GGGV    CG+
Subjt:  -----YVDNCDDGTDGGGVYGGGVGSNSCGN

XP_023543717.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]1.5e-2243.22Show/hide
Query:  LLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSR------PLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQ
        + D+KPSI+I+IIC SL+    ILCC CII  G R+KD+ + PTPS SI   R      P Q+Y D+E GQGIR YRQD T RSE+S+ SD  G+QR  +
Subjt:  LLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSR------PLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQ

Query:  SIFTDARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGD-----------
          F   R            +RSS+ +E S+  D QS                 KDGGMAILAGAGAA+A AA  +GLSS  GG++  G+           
Subjt:  SIFTDARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGD-----------

Query:  --YVD-----NCDDGTDGGGVYG---GGVGSNSCGN
          Y D     N D G+ GGGV G   G VG ++CG+
Subjt:  --YVD-----NCDDGTDGGGVYG---GGVGSNSCGN

TrEMBL top hitse value%identityAlignment
A0A0A0L0B2 Uncharacterized protein1.6e-10498.6Show/hide
Query:  MLLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTD
        MLLDLKPSILIVIICTSLVVVAAILCCFCIIG GYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRG QSIFTD
Subjt:  MLLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTD

Query:  ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYG
        ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYG
Subjt:  ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYG

Query:  GGVGSNSCGNGSQL
        GGVGSNS GNGSQL
Subjt:  GGVGSNSCGNGSQL

A0A5A7VBP6 Uncharacterized protein5.3e-7988.77Show/hide
Query:  IIGGGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTDARGFQTSEQSIFPDTRSSRRNER-SILPD
        +IGGGY+KKDA+ LPTPSVSIGRSRPLQTYRD+EFGQGIRTYRQDSTPRSE+SI  DTRGSQR  QSIF DARGFQTSEQSIFPDTRSSRRNE   ILPD
Subjt:  IIGGGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTDARGFQTSEQSIFPDTRSSRRNER-SILPD

Query:  TQSSRRSEQIDRQD-TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVGSNSCGNGSQL
        TQ SRRSE+IDRQD TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDG YVDNC DGTDG GVYGGG GSNSCGNGSQL
Subjt:  TQSSRRSEQIDRQD-TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVGSNSCGNGSQL

A0A6J1CLX2 ctenidin-3-like1.5e-0934.4Show/hide
Query:  LKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSR--PLQTY--RDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTD
        +KP   I+IIC+S++    ILCC CII G  +K+     P  S +IG     P QTY   DIE GQG RT                              
Subjt:  LKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSR--PLQTY--RDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTD

Query:  ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDG--TDG---
                                              +RQ  R S IKDGGMAILAGAG AIATAA + GLSS    E  +G Y D+C DG  +DG   
Subjt:  ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDG--TDG---

Query:  GGVYGGGVGSNSCGNGSQ
         G  G G G   CG+G +
Subjt:  GGVYGGGVGSNSCGNGSQ

A0A6J1FMR9 glycine-rich RNA-binding protein GRP2A-like8.3e-2443.29Show/hide
Query:  LLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSR-------PLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGS
        + D+KPSI+I+IIC SL+    ILCC CII G  RK+  +  PTPS SI   R       P Q+Y D+E GQGIR YRQD T RSE+S+ SD  G+QR  
Subjt:  LLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSR-------PLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGS

Query:  QSIF-TD-ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGD--------
        Q  F TD +R  Q+SE S+  D RS                               KDGGMAI AGAGAA+A AA  LGLSS  GG++  G+        
Subjt:  QSIF-TD-ARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGD--------

Query:  -----YVDNCDDGTDGGGVYGGGVGSNSCGN
             Y D+C +G   GG  GGGV    CG+
Subjt:  -----YVDNCDDGTDGGGVYGGGVGSNSCGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATTGGATTTGAAACCTTCCATCCTCATTGTCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATAATTGGAGGTGGTTATAGAAA
GAAAGATGCAAATCAATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATATTGAATTTGGACAAGGTATTCGAACTTATAGACAAG
ACTCGACTCCAAGAAGCGAACGAAGCATTTCTTCGGACACACGAGGTTCTCAAAGAGGTTCTCAAAGCATTTTTACTGATGCACGAGGTTTTCAAACAAGTGAACAAAGC
ATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACGTAGTATTCTACCGGACACACAAAGTTCTCGAAGAAGTGAACAAATCGACCGACAAGATACTCGAGAAAGCAG
AATCAAGGACGGTGGGATGGCCATCTTAGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGGGGAGAAGATATCGATGGTG
ATTATGTCGATAACTGTGACGATGGTACTGATGGCGGTGGCGTCTATGGTGGTGGTGTTGGCAGCAACAGCTGTGGCAATGGCTCTCAACTTTGA
mRNA sequenceShow/hide mRNA sequence
AAGAGATATTGTACATATTATACTGCTAAAGTCTCAATAATGTTATTGGATTTGAAACCTTCCATCCTCATTGTCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGAT
TTTATGTTGCTTTTGTATAATTGGAGGTGGTTATAGAAAGAAAGATGCAAATCAATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGG
ATATTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACGAAGCATTTCTTCGGACACACGAGGTTCTCAAAGAGGTTCTCAAAGCATT
TTTACTGATGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACGTAGTATTCTACCGGACACACAAAGTTCTCGAAG
AAGTGAACAAATCGACCGACAAGATACTCGAGAAAGCAGAATCAAGGACGGTGGGATGGCCATCTTAGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTG
GTTTAAGTAGTTATCAAGGGGGAGAAGATATCGATGGTGATTATGTCGATAACTGTGACGATGGTACTGATGGCGGTGGCGTCTATGGTGGTGGTGTTGGCAGCAACAGC
TGTGGCAATGGCTCTCAACTTTGAGGTTTCATGTAAAGCAAAACAAGGTGTGCAACACCACAAAACTCCTCTATTATTCCTTTTTGTTGCTTGGTACTTCTCTTCCCATT
GTTCTTCTTTCCTTTTCCAAGGCCTTTCATCTTTTAGAAGGAACCGTATAACTTTTACTTTTATCACCACCTTATTGGTCAC
Protein sequenceShow/hide protein sequence
MLLDLKPSILIVIICTSLVVVAAILCCFCIIGGGYRKKDANQLPTPSVSIGRSRPLQTYRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGSQSIFTDARGFQTSEQS
IFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVGSNSCGNGSQL