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CSPI04G07810 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G07810
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag-pol polyprotein
Genome locationChr4:5633041..5633529
RNA-Seq ExpressionCSPI04G07810
SyntenyCSPI04G07810
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038419.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.5e-5166.05Show/hide
Query:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM
        MVTVDG SVPKP+ DWTDAEEQ  +G +RA+N I+NG+DLNVFKLIN     K+AWK LEV +EGTSKVK  R  L+T+KFE+L+M E+E++++YN RV+
Subjt:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM

Query:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL
        EIAN+S  LGE IS SK+VRKVLRSLP++ DMKV  IE+AQDITTL+LD+LFGSL TFE+ +
Subjt:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL

KAA0039138.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.1e-5066.67Show/hide
Query:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM
        MVTVDG SVPK E DWTDAEEQ  +  +RA+N I+NGVDLNVFKLIN     K+AWK LEV +EGTSKVK  R  L+T+KFE+LKM E+E+++KYN RV+
Subjt:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM

Query:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL
        +I N+S  LGE I  SK+VRKVLRSLPR+FDMKV  IE+AQDITTL LD+LFGSL TFE+ +
Subjt:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL

KAA0060333.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.1e-5066.25Show/hide
Query:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM
        M+TV+G SVPKPE DWTDAEEQ  +G ++ALN I+NGVDLN+FKLIN S   K+AWK+LEV +EGTSKVK     L+T+KFE+L+M ++E+++ YN RV+
Subjt:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM

Query:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEI
        EIANES  LGE IS SK+VRKVLRSLP++FDMKV  IE+A DITTL LD+LFGSL TFE+
Subjt:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEI

KAA0063428.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.2e-5066.25Show/hide
Query:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM
        M+TV+G SVPKPE DWTDAEEQ  +G +RALN I+NG+DLNVFKLIN     K+AWK+LEV +EGTSKVK  R  L+T+KFE+L+M E+E+++ YN RV+
Subjt:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM

Query:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEI
        EIANES  LGE I  SK+VRK LRSLPR+FDMKV  IE+A DIT+L LD+LFGSL TFE+
Subjt:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEI

TYJ96973.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.6e-5165.43Show/hide
Query:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM
        MVTVDG SVPKP+ DWTDAEEQ  +G +RA+N I+NGVDLNVFKLIN     K+AWK LEV +EGTSKVK  R  L+T+KFE+L+M ++E++++YN RV+
Subjt:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM

Query:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL
        EIAN+S  LGE IS SK+VRKVLRSLP++ DMKV  IE+AQD+TTL+LD+LFGSL TFE+ +
Subjt:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL

TrEMBL top hitse value%identityAlignment
A0A5A7TAN7 Gag-pol polyprotein1.2e-5166.05Show/hide
Query:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM
        MVTVDG SVPKP+ DWTDAEEQ  +G +RA+N I+NG+DLNVFKLIN     K+AWK LEV +EGTSKVK  R  L+T+KFE+L+M E+E++++YN RV+
Subjt:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM

Query:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL
        EIAN+S  LGE IS SK+VRKVLRSLP++ DMKV  IE+AQDITTL+LD+LFGSL TFE+ +
Subjt:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL

A0A5A7V769 Gag-pol polyprotein6.0e-5166.25Show/hide
Query:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM
        M+TV+G SVPKPE DWTDAEEQ  +G +RALN I+NG+DLNVFKLIN     K+AWK+LEV +EGTSKVK  R  L+T+KFE+L+M E+E+++ YN RV+
Subjt:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM

Query:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEI
        EIANES  LGE I  SK+VRK LRSLPR+FDMKV  IE+A DIT+L LD+LFGSL TFE+
Subjt:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEI

A0A5D3BCD8 Gag-pol polyprotein2.7e-5165.43Show/hide
Query:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM
        MVTVDG SVPKP+ DWTDAEEQ  +G +RA+N I+NGVDLNVFKLIN     K+AWK LEV +EGTSKVK  R  L+T+KFE+L+M ++E++++YN RV+
Subjt:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM

Query:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL
        EIAN+S  LGE IS SK+VRKVLRSLP++ DMKV  IE+AQD+TTL+LD+LFGSL TFE+ +
Subjt:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL

A0A5D3DER3 Gag-pol polyprotein1.0e-5066.25Show/hide
Query:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM
        M+TV+G SVPKPE DWTDAEEQ  +G ++ALN I+NGVDLN+FKLIN S   K+AWK+LEV +EGTSKVK     L+T+KFE+L+M ++E+++ YN RV+
Subjt:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM

Query:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEI
        EIANES  LGE IS SK+VRKVLRSLP++FDMKV  IE+A DITTL LD+LFGSL TFE+
Subjt:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEI

A0A5D3DTY9 Gag-pol polyprotein1.0e-5066.67Show/hide
Query:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM
        MVTVDG SVPK E DWTDAEEQ  +  +RA+N I+NGVDLNVFKLIN     K+AWK LEV +EGTSKVK  R  L+T+KFE+LKM E+E+++KYN RV+
Subjt:  MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVM

Query:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL
        +I N+S  LGE I  SK+VRKVLRSLPR+FDMKV  IE+AQDITTL LD+LFGSL TFE+ +
Subjt:  EIANESFNLGEGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTACTGTAGATGGTAAATCTGTTCCAAAACCTGAAAAAGATTGGACAGATGCAGAAGAACAGCAGTTGTTGGGGTATTCTCGTGCACTCAATGTCATATATAATGG
AGTCGATCTGAACGTGTTCAAATTAATCAATTATAGCATTATAGTAAAAGATGCTTGGAAATCACTTGAAGTGGTATTTGAGGGTACCTCTAAAGTAAAGACTTTTCGTA
AGCTACTATTAACAACTAAGTTCGAATCATTAAAAATGATGGAAGAAGAGACTATAACTAAATACAATGTGAGAGTTATGGAAATTGCCAATGAATCCTTCAATCTTGGT
GAGGGAATTTCATACTCTAAACTTGTTAGGAAAGTTTTGCGATCACTTCCTAGAAGGTTTGATATGAAAGTAATAGTGATTGAAAAAGCACAGGACATCACTACACTATC
TCTTGATCAATTGTTTGGATCCTTATGTACATTTGAAATTACCTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTACTGTAGATGGTAAATCTGTTCCAAAACCTGAAAAAGATTGGACAGATGCAGAAGAACAGCAGTTGTTGGGGTATTCTCGTGCACTCAATGTCATATATAATGG
AGTCGATCTGAACGTGTTCAAATTAATCAATTATAGCATTATAGTAAAAGATGCTTGGAAATCACTTGAAGTGGTATTTGAGGGTACCTCTAAAGTAAAGACTTTTCGTA
AGCTACTATTAACAACTAAGTTCGAATCATTAAAAATGATGGAAGAAGAGACTATAACTAAATACAATGTGAGAGTTATGGAAATTGCCAATGAATCCTTCAATCTTGGT
GAGGGAATTTCATACTCTAAACTTGTTAGGAAAGTTTTGCGATCACTTCCTAGAAGGTTTGATATGAAAGTAATAGTGATTGAAAAAGCACAGGACATCACTACACTATC
TCTTGATCAATTGTTTGGATCCTTATGTACATTTGAAATTACCTTATGA
Protein sequenceShow/hide protein sequence
MVTVDGKSVPKPEKDWTDAEEQQLLGYSRALNVIYNGVDLNVFKLINYSIIVKDAWKSLEVVFEGTSKVKTFRKLLLTTKFESLKMMEEETITKYNVRVMEIANESFNLG
EGISYSKLVRKVLRSLPRRFDMKVIVIEKAQDITTLSLDQLFGSLCTFEITL