CuGenDBv2

Gene ID	CSPI04G08500
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Sister chromatid cohesion protein
Genome location	Chr4:6245279..6249280
RNA-Seq Expression	CSPI04G08500
Synteny	CSPI04G08500
Gene Ontology terms	GO:0010468 - regulation of gene expression (biological process) GO:0061780 - mitotic cohesin loading (biological process) GO:0071169 - establishment of protein localization to chromatin (biological process) GO:1990414 - replication-born double-strand break repair via sister chromatid exchange (biological process) GO:0090694 - Scc2-Scc4 cohesin loading complex (cellular component) GO:0003682 - chromatin binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR033031 - Scc2/Nipped-B family

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK19528.1 nipped-B-like protein isoform X2 [Cucumis melo var. makuwa]

8.4e-153

90.74

Show/hide

Query:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE
        MSLP S  ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRL DHPDATYATST+DLLPHS+KIADLLLATDVSYLNLREDA+VLQE
Subjt:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE

Query:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES
        G VEPFELYEEVLRHDGDAFSYTAPGPIM+HVSSST PDRKVFEQRL IRNQVEGDSRTTQS K EPETMPTNDT ISSSRKVKTKKK RDETSSGRT S
Subjt:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES

Query:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLVDH
        SELQDNTLA +CEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEHADEG+   DH
Subjt:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLVDH

Query:  CMDISLASNSNIKQATQHKRCILS
        C +I LASNSNIKQAT HK  IL+
Subjt:  CMDISLASNSNIKQATQHKRCILS

XP_008451669.1 PREDICTED: nipped-B-like protein isoform X2 [Cucumis melo]

6.6e-142

93.15

Show/hide

Query:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE
        MSLP S  ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRL DHPDATYATST+DLLPHS+KIADLLLATDVSYLNLREDA+VLQE
Subjt:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE

Query:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES
        G VEPFELYEEVLRHDGDAFSYTAPGPIM+HVSSST PDRKVFEQRL IRNQVEGDSRTTQS K EPETMPTNDT ISSSRKVKTKKK RDETSSGRT S
Subjt:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES

Query:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD
        SELQDNTLA +CEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH+D
Subjt:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD

XP_011653342.1 sister chromatid cohesion protein SCC2 isoform X1 [Cucumis sativus]

5.8e-154

98.97

Show/hide

Query:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP
        MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP
Subjt:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP

Query:  VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSE
        VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRT+SSE
Subjt:  VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSE

Query:  LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD
        LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH+D
Subjt:  LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD

XP_031740790.1 sister chromatid cohesion protein SCC2 isoform X2 [Cucumis sativus]

5.8e-154

98.97

Show/hide

Query:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP
        MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP
Subjt:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP

Query:  VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSE
        VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRT+SSE
Subjt:  VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSE

Query:  LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD
        LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH+D
Subjt:  LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD

XP_031740791.1 sister chromatid cohesion protein SCC2 isoform X3 [Cucumis sativus]

5.8e-154

98.97

Show/hide

Query:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP
        MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP
Subjt:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP

Query:  VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSE
        VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRT+SSE
Subjt:  VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSE

Query:  LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD
        LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH+D
Subjt:  LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KVP6 Uncharacterized protein

1.8e-153

99.31

Show/hide

Query:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP
        MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP
Subjt:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGP

Query:  VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSE
        VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRT+SSE
Subjt:  VEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSE

Query:  LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEH
        LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH
Subjt:  LQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEH

A0A1S3BS09 Sister chromatid cohesion protein

3.2e-142

93.15

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Query:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE
        MSLP S  ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRL DHPDATYATST+DLLPHS+KIADLLLATDVSYLNLREDA+VLQE
Subjt:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE

Query:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES
        G VEPFELYEEVLRHDGDAFSYTAPGPIM+HVSSST PDRKVFEQRL IRNQVEGDSRTTQS K EPETMPTNDT ISSSRKVKTKKK RDETSSGRT S
Subjt:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES

Query:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD
        SELQDNTLA +CEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH+D
Subjt:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD

A0A1S3BSV1 Sister chromatid cohesion protein

3.2e-142

93.15

Show/hide

Query:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE
        MSLP S  ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRL DHPDATYATST+DLLPHS+KIADLLLATDVSYLNLREDA+VLQE
Subjt:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE

Query:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES
        G VEPFELYEEVLRHDGDAFSYTAPGPIM+HVSSST PDRKVFEQRL IRNQVEGDSRTTQS K EPETMPTNDT ISSSRKVKTKKK RDETSSGRT S
Subjt:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES

Query:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD
        SELQDNTLA +CEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH+D
Subjt:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD

A0A5A7UVQ1 Sister chromatid cohesion protein

3.2e-142

93.15

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Query:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE
        MSLP S  ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRL DHPDATYATST+DLLPHS+KIADLLLATDVSYLNLREDA+VLQE
Subjt:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE

Query:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES
        G VEPFELYEEVLRHDGDAFSYTAPGPIM+HVSSST PDRKVFEQRL IRNQVEGDSRTTQS K EPETMPTNDT ISSSRKVKTKKK RDETSSGRT S
Subjt:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES

Query:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD
        SELQDNTLA +CEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH+D
Subjt:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHAD

A0A5D3D7J1 Nipped-B-like protein isoform X2

4.0e-153

90.74

Show/hide

Query:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE
        MSLP S  ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRL DHPDATYATST+DLLPHS+KIADLLLATDVSYLNLREDA+VLQE
Subjt:  MSLPLS--ASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQE

Query:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES
        G VEPFELYEEVLRHDGDAFSYTAPGPIM+HVSSST PDRKVFEQRL IRNQVEGDSRTTQS K EPETMPTNDT ISSSRKVKTKKK RDETSSGRT S
Subjt:  GPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTES

Query:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLVDH
        SELQDNTLA +CEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEHADEG+   DH
Subjt:  SELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLVDH

Query:  CMDISLASNSNIKQATQHKRCILS
        C +I LASNSNIKQAT HK  IL+
Subjt:  CMDISLASNSNIKQATQHKRCILS

SwissProt top hits

e value

%identity

Alignment

A5HEI1 Sister chromatid cohesion protein SCC2

3.8e-55

41.49

Show/hide

Query:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDP-HLRLSD---HPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVL
        MS P S+S   S+S  ++ GIGL+NT+ SEV P LPLPSLP+F GA++P   +L D         +   S++L  S +IA++L  TDVSYL+LR +A+  
Subjt:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDP-HLRLSD---HPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVL

Query:  QEGPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSR-----------------------------TTQSHK-----
             E F+LY+ VLR +  AF Y  PGP  D + ++  P + + E  +P++ Q + D+                              T QS K     
Subjt:  QEGPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSR-----------------------------TTQSHK-----

Query:  -TEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPL
         + PET+  N  ++S+S+K K KKK +D+ SS + + S LQ++ + N CE LEDFCGRAE+  DDRDE+EW ++P+ ++R+L+NE+M+IRSK LLH+VP+
Subjt:  -TEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPL

Query:  DTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLV
        D L+RLL+ LD+QIHRAEGLS+   EH+D    L+
Subjt:  DTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLV

Arabidopsis top hits

e value

%identity

Alignment

AT5G15540.1 PHD finger family protein

2.7e-56

41.49

Show/hide

Query:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDP-HLRLSD---HPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVL
        MS P S+S   S+S  ++ GIGL+NT+ SEV P LPLPSLP+F GA++P   +L D         +   S++L  S +IA++L  TDVSYL+LR +A+  
Subjt:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDP-HLRLSD---HPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVL

Query:  QEGPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSR-----------------------------TTQSHK-----
             E F+LY+ VLR +  AF Y  PGP  D + ++  P + + E  +P++ Q + D+                              T QS K     
Subjt:  QEGPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSR-----------------------------TTQSHK-----

Query:  -TEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPL
         + PET+  N  ++S+S+K K KKK +D+ SS + + S LQ++ + N CE LEDFCGRAE+  DDRDE+EW ++P+ ++R+L+NE+M+IRSK LLH+VP+
Subjt:  -TEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPL

Query:  DTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLV
        D L+RLL+ LD+QIHRAEGLS+   EH+D    L+
Subjt:  DTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLV

AT5G15540.2 PHD finger family protein

3.6e-53

40.9

Show/hide

Query:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDP-HLRLSD---HPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVL
        MS P S+S   S+S  ++ GIGL+NT+ SEV P LPLPSLP+F GA++P   +L D         +   S++L  S +IA++L  TDVSYL+LR +A+  
Subjt:  MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDP-HLRLSD---HPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVL

Query:  QEGPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSR-----------------------------TTQSHK-----
             E F+LY+ VLR +  AF  +  GP  D + ++  P + + E  +P++ Q + D+                              T QS K     
Subjt:  QEGPVEPFELYEEVLRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSR-----------------------------TTQSHK-----

Query:  -TEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPL
         + PET+  N  ++S+S+K K KKK +D+ SS + + S LQ++ + N CE LEDFCGRAE+  DDRDE+EW ++P+ ++R+L+NE+M+IRSK LLH+VP+
Subjt:  -TEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPL

Query:  DTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLV
        D L+RLL+ LD+QIHRAEGLS+   EH+D    L+
Subjt:  DTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLV

Sequences

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CDS sequence

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ATGAGTTTGCCGCTCTCTGCTTCTGCTTCTTCCTCTGCCTCTACCTCCTCCAACCGCGGCATCGGCTTATCTAATACTATACACTCTGAAGTTGCTCCTTGCTTGCCTTT
GCCATCACTTCCGGTCTTCTTTGGCGCCTCTGACCCTCACCTTCGCCTCTCCGATCACCCCGACGCTACCTATGCTACCTCCACCTCTGATCTTCTCCCTCACTCTAGGA
AGATCGCTGATCTGCTTCTTGCTACTGATGTCTCTTACTTAAATCTCAGAGAAGATGCTAAGGTTCTTCAAGAAGGGCCTGTGGAGCCTTTTGAACTCTATGAGGAAGTT
CTACGCCATGATGGTGACGCCTTCAGTTATACTGCTCCAGGTCCTATTATGGATCATGTCTCCAGCAGTACGGCACCTGATAGGAAAGTTTTTGAGCAAAGACTACCTAT
TAGAAATCAAGTTGAAGGAGACTCTAGAACAACTCAAAGTCATAAGACTGAACCTGAAACTATGCCTACTAATGATACACAAATATCATCTTCTAGAAAAGTAAAAACTA
AGAAGAAAGGCCGTGATGAAACTTCTTCTGGTAGAACAGAATCTTCTGAGCTTCAAGACAACACCCTTGCAAACACTTGCGAGTTCTTGGAGGACTTTTGTGGTAGAGCT
GAAATTGTCGACGATGATCGTGATGAATCAGAGTGGCTGGCTCTTCCTCTTACTGATCTTCGAATGCTTGTCAATGAAATAATGTCTATACGTTCGAAGAAACTTCTTCA
TTTGGTTCCTCTAGATACGCTGACGAGGCTGTTGAAGGTTCTAGATAATCAGATACATAGAGCAGAAGGATTGTCTGTTGAAGAATGTGAACATGCGGATGAAGGGGAGG
GACTCGTCGATCATTGCATGGATATTTCTTTGGCTAGCAATTCAAACATCAAACAAGCAACTCAACACAAACGTTGCATACTGAGCACCAAAGGAGACGATCTAGATTTT
CCTCCGCCTTCTAACAAAGATTTCAGCAGAAAAAACCCATTAATGAGGACAATTTTCTAG

mRNA sequence

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AAAAAAAGAAAAAGAATATGGAGTCCACCGAAGGGGGAGGCGAAAGAAGAACACAAATTTCCACTGTTTCCTCACCATCGCCTCCTCCATTTTCTTGGCACTCTGCTTAT
AATTATCATTATTTTCCAAAAATTAAAATATTTATCTGTCCAAAAAAATTTCCAATTTTTGCTCATAAACACAATTTCCCCGCCATTTGCTTTTGGTTTGGCCTCTCTCT
CTCTCCCCTTTCTTCCTCTATCGCTAGGGCTCCATCTTCTTCTCTCCCTCTTTTCCTCTCCTCTGTAAAACTCACCTCCTTCTCAATTCAACCTTGATTTCACTTCCTTC
AACCTTTTTACTCTACATGCTCTTCCTCTCCGGCTTTCTTCTCCATGAGTTTGCCGCTCTCTGCTTCTGCTTCTTCCTCTGCCTCTACCTCCTCCAACCGCGGCATCGGC
TTATCTAATACTATACACTCTGAAGTTGCTCCTTGCTTGCCTTTGCCATCACTTCCGGTCTTCTTTGGCGCCTCTGACCCTCACCTTCGCCTCTCCGATCACCCCGACGC
TACCTATGCTACCTCCACCTCTGATCTTCTCCCTCACTCTAGGAAGATCGCTGATCTGCTTCTTGCTACTGATGTCTCTTACTTAAATCTCAGAGAAGATGCTAAGGTTC
TTCAAGAAGGGCCTGTGGAGCCTTTTGAACTCTATGAGGAAGTTCTACGCCATGATGGTGACGCCTTCAGTTATACTGCTCCAGGTCCTATTATGGATCATGTCTCCAGC
AGTACGGCACCTGATAGGAAAGTTTTTGAGCAAAGACTACCTATTAGAAATCAAGTTGAAGGAGACTCTAGAACAACTCAAAGTCATAAGACTGAACCTGAAACTATGCC
TACTAATGATACACAAATATCATCTTCTAGAAAAGTAAAAACTAAGAAGAAAGGCCGTGATGAAACTTCTTCTGGTAGAACAGAATCTTCTGAGCTTCAAGACAACACCC
TTGCAAACACTTGCGAGTTCTTGGAGGACTTTTGTGGTAGAGCTGAAATTGTCGACGATGATCGTGATGAATCAGAGTGGCTGGCTCTTCCTCTTACTGATCTTCGAATG
CTTGTCAATGAAATAATGTCTATACGTTCGAAGAAACTTCTTCATTTGGTTCCTCTAGATACGCTGACGAGGCTGTTGAAGGTTCTAGATAATCAGATACATAGAGCAGA
AGGATTGTCTGTTGAAGAATGTGAACATGCGGATGAAGGGGAGGGACTCGTCGATCATTGCATGGATATTTCTTTGGCTAGCAATTCAAACATCAAACAAGCAACTCAAC
ACAAACGTTGCATACTGAGCACCAAAGGAGACGATCTAGATTTTCCTCCGCCTTCTAACAAAGATTTCAGCAGAAAAAACCCATTAATGAGGACAATTTTCTAG

Protein sequence

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MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDATYATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGPVEPFELYEEV
LRHDGDAFSYTAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRKVKTKKKGRDETSSGRTESSELQDNTLANTCEFLEDFCGRA
EIVDDDRDESEWLALPLTDLRMLVNEIMSIRSKKLLHLVPLDTLTRLLKVLDNQIHRAEGLSVEECEHADEGEGLVDHCMDISLASNSNIKQATQHKRCILSTKGDDLDF
PPPSNKDFSRKNPLMRTIF

CSPI04G08500 (gene) of Cucumber (PI 183967) v1 genome