; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G08600 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G08600
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr4:6372059..6372676
RNA-Seq ExpressionCSPI04G08600
SyntenyCSPI04G08600
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036465.1 putative Polyprotein [Cucumis melo var. makuwa]1.8e-4562.5Show/hide
Query:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRST---------------------------ANLVEDEYVAM
        SL  + ++ E+AR+HD+KEEVNAI RKK   VLK DLKPKGN+MK E NKQNN   PQ RST                           ANLVEDE +AM
Subjt:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRST---------------------------ANLVEDEYVAM

Query:  IFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV
        I EVNVI G+EGWWLD GASRHVCH+LSLFR YNE+KDKNI LGD+HT KVAG+REVELKFT+GKTLV
Subjt:  IFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV

KAA0050409.1 hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]1.7e-4870.92Show/hide
Query:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL
        +L  + ++ EEA++HD+KEEVNAIPRKK   VLK DLKPKGN+MK  FNKQNN   PQS S ANL+E+E VAMI EVNVI G+EGWWLDTGASRHVCH+L
Subjt:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL

Query:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV
        S+FR YNE+KDKNI LGD+H  KV G+ EVELKFT+GKTLV
Subjt:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV

KAA0054951.1 putative Polyprotein [Cucumis melo var. makuwa]1.1e-4766.04Show/hide
Query:  EEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRST---------------------------ANLVEDEYVAMIFEVNVIRG
        EEAR+HDQKEEVN IPRKK   VLKPDLKPKGN+MK E NKQNN   PQSRST                           ANL+EDE +AMIFEVNVI G
Subjt:  EEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRST---------------------------ANLVEDEYVAMIFEVNVIRG

Query:  TEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV
        ++GWWLDTGASRHVCH+LSLFR YNE+KDKNI LGD+HT K+AG+ EVELKFT+GKTLV
Subjt:  TEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV

KAA0059670.1 putative Polyprotein [Cucumis melo var. makuwa]3.2e-5073.76Show/hide
Query:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL
        SL  + ++ EEAR+H++KEEVNAIPRKK   VLKPDLKPKGN+MK E NKQNN   PQSRSTANL+EDE VAMI EVNVIRG EGWWLDTGAS HVCH+L
Subjt:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL

Query:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV
        S+FR YNE+KDK I LGD+HT KVAG+ +VELKFT+GK LV
Subjt:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV

TYJ98000.1 hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]8.1e-4668.09Show/hide
Query:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL
        +L  + ++ EEA++ D+K+EVNAIPRKK   VLK DLKPKGN+MK  FNKQNN   PQS S ANL+E+E VAMI EVNVI G+EGWWLDT ASRHVCH+L
Subjt:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL

Query:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV
        S+FR YNE+KDKNI LGD+H  KV G+ EVEL+FT+GKTLV
Subjt:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV

TrEMBL top hitse value%identityAlignment
A0A5A7T4T3 Putative Polyprotein8.7e-4662.5Show/hide
Query:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRST---------------------------ANLVEDEYVAM
        SL  + ++ E+AR+HD+KEEVNAI RKK   VLK DLKPKGN+MK E NKQNN   PQ RST                           ANLVEDE +AM
Subjt:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRST---------------------------ANLVEDEYVAM

Query:  IFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV
        I EVNVI G+EGWWLD GASRHVCH+LSLFR YNE+KDKNI LGD+HT KVAG+REVELKFT+GKTLV
Subjt:  IFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV

A0A5A7UA92 Uncharacterized protein8.5e-4970.92Show/hide
Query:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL
        +L  + ++ EEA++HD+KEEVNAIPRKK   VLK DLKPKGN+MK  FNKQNN   PQS S ANL+E+E VAMI EVNVI G+EGWWLDTGASRHVCH+L
Subjt:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL

Query:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV
        S+FR YNE+KDKNI LGD+H  KV G+ EVELKFT+GKTLV
Subjt:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV

A0A5A7UN04 Putative Polyprotein5.5e-4866.04Show/hide
Query:  EEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRST---------------------------ANLVEDEYVAMIFEVNVIRG
        EEAR+HDQKEEVN IPRKK   VLKPDLKPKGN+MK E NKQNN   PQSRST                           ANL+EDE +AMIFEVNVI G
Subjt:  EEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRST---------------------------ANLVEDEYVAMIFEVNVIRG

Query:  TEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV
        ++GWWLDTGASRHVCH+LSLFR YNE+KDKNI LGD+HT K+AG+ EVELKFT+GKTLV
Subjt:  TEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV

A0A5D3BDS3 Uncharacterized protein3.9e-4668.09Show/hide
Query:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL
        +L  + ++ EEA++ D+K+EVNAIPRKK   VLK DLKPKGN+MK  FNKQNN   PQS S ANL+E+E VAMI EVNVI G+EGWWLDT ASRHVCH+L
Subjt:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL

Query:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV
        S+FR YNE+KDKNI LGD+H  KV G+ EVEL+FT+GKTLV
Subjt:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV

A0A5D3DRT2 Putative Polyprotein1.5e-5073.76Show/hide
Query:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL
        SL  + ++ EEAR+H++KEEVNAIPRKK   VLKPDLKPKGN+MK E NKQNN   PQSRSTANL+EDE VAMI EVNVIRG EGWWLDTGAS HVCH+L
Subjt:  SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL

Query:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV
        S+FR YNE+KDK I LGD+HT KVAG+ +VELKFT+GK LV
Subjt:  SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTTGATGATCAATTTCAAGTTGCGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGA
TTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGCGAACCTGGTAGAAGATGAATATGTAGCTA
TGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATA
AAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGCTTGATGATCAATTTCAAGTTGCGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGA
TTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGCGAACCTGGTAGAAGATGAATATGTAGCTA
TGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATA
AAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG
Protein sequenceShow/hide protein sequence
MSLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEI
KDKNIFLGDNHTIKVAGVREVELKFTTGKTLV