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CSPI04G08610 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G08610
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr4:6372713..6373129
RNA-Seq ExpressionCSPI04G08610
SyntenyCSPI04G08610
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050409.1 hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]1.1e-5076.69Show/hide
Query:  GDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQK
        G L SSDLNRPF FEGA+FKRWKQ M FFLTLKKVATACT++ PK+ E + T+E +K  T W+ET+F+CKNLILNGLTDELYDYYSTM+TAK+VW  LQK
Subjt:  GDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQK

Query:  KYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH
        KYDTE+ GSKKY VSRYLRYQMTDDRSVEAQ H
Subjt:  KYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH

KAA0058200.1 uncharacterized protein E6C27_scaffold274G005210 [Cucumis melo var. makuwa]3.7e-5173.38Show/hide
Query:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV
        MAG  Q DL S DLNRPF FEGA+FKRWKQ M FFLTLKKVATACT++ P++LE + TE+ +K    W+ET+F+CKNLILNGLTDELYDYYSTM+TAKEV
Subjt:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV

Query:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH
        W  LQKKYDTE+  SKKY +SRYLRYQMTDD+SVEAQ H
Subjt:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH

KAA0060458.1 uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa]1.3e-5174.82Show/hide
Query:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQN-MFFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV
        MAG  Q DL SSDLNR F FEGA+FKRWKQ  +FFLTLKKVATACT++ PK+ E + TEE +K    W+ET+F+CKNLILNGLTDELYDYYSTM+TAKEV
Subjt:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQN-MFFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV

Query:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH
        W  LQKKYDTE+ GSKKY VSRYLRYQMTDD+SVEAQ H
Subjt:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH

KAA0065374.1 uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa]1.7e-4871.22Show/hide
Query:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV
        M G  Q DL SSDLNRPF FEGA+FKRWKQ M FFLTLKKVATACT++  K+ E +  EE +K    W+ET+F+CKNLILNGLTDELYDYYSTM+T KEV
Subjt:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV

Query:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH
        W  LQKKYDT++  SKKY VSRYLRYQMTDD+SVE Q H
Subjt:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH

TYJ98000.1 hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]2.4e-5076.69Show/hide
Query:  GDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQK
        G L SSDLNRPF FEGA+FKRWKQ M FFLTLKKVATACT + PK+ E + T+E +K  T W+ET+F+CKNLILNGLTDELYDYYSTM+TAK+VW  LQK
Subjt:  GDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQK

Query:  KYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH
        KYDTE+ GSKKY VSRYLRYQMTDDRSVEAQ H
Subjt:  KYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH

TrEMBL top hitse value%identityAlignment
A0A5A7UA92 Uncharacterized protein5.1e-5176.69Show/hide
Query:  GDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQK
        G L SSDLNRPF FEGA+FKRWKQ M FFLTLKKVATACT++ PK+ E + T+E +K  T W+ET+F+CKNLILNGLTDELYDYYSTM+TAK+VW  LQK
Subjt:  GDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQK

Query:  KYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH
        KYDTE+ GSKKY VSRYLRYQMTDDRSVEAQ H
Subjt:  KYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH

A0A5A7USR3 Uncharacterized protein1.8e-5173.38Show/hide
Query:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV
        MAG  Q DL S DLNRPF FEGA+FKRWKQ M FFLTLKKVATACT++ P++LE + TE+ +K    W+ET+F+CKNLILNGLTDELYDYYSTM+TAKEV
Subjt:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV

Query:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH
        W  LQKKYDTE+  SKKY +SRYLRYQMTDD+SVEAQ H
Subjt:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH

A0A5A7UYY4 Uncharacterized protein6.1e-5274.82Show/hide
Query:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQN-MFFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV
        MAG  Q DL SSDLNR F FEGA+FKRWKQ  +FFLTLKKVATACT++ PK+ E + TEE +K    W+ET+F+CKNLILNGLTDELYDYYSTM+TAKEV
Subjt:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQN-MFFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV

Query:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH
        W  LQKKYDTE+ GSKKY VSRYLRYQMTDD+SVEAQ H
Subjt:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH

A0A5D3BDS3 Uncharacterized protein1.1e-5076.69Show/hide
Query:  GDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQK
        G L SSDLNRPF FEGA+FKRWKQ M FFLTLKKVATACT + PK+ E + T+E +K  T W+ET+F+CKNLILNGLTDELYDYYSTM+TAK+VW  LQK
Subjt:  GDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQK

Query:  KYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH
        KYDTE+ GSKKY VSRYLRYQMTDDRSVEAQ H
Subjt:  KYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH

A0A5D3DC59 Reverse transcriptase Ty1/copia-type domain-containing protein8.2e-4971.22Show/hide
Query:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV
        M G  Q DL SSDLNRPF FEGA+FKRWKQ M FFLTLKKVATACT++  K+ E +  EE +K    W+ET+F+CKNLILNGLTDELYDYYSTM+T KEV
Subjt:  MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEV

Query:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH
        W  LQKKYDT++  SKKY VSRYLRYQMTDD+SVE Q H
Subjt:  WGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDRSVEAQWH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGATCATTCCAAGGTGATTTGAGTTCCTCTGACCTCAACCGTCCTTTTCATTTTGAAGGAGCAAATTTTAAGAGGTGGAAACAAAATATGTTTTTTCTTACTTT
GAAGAAGGTGGCTACCGCATGTACCTCTAAAGGACCAAAAATCCTAGAGTCCAATCGAACTGAGGAGCATGTCAAAACTCATACCGCGTGGTCAGAAACCAATTTTATGT
GTAAGAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCTACTGCGAAAGAAGTTTGGGGTGTGTTACAAAAGAAGTATGACACTGAG
AAAGATGGATCTAAGAAGTATGTGGTAAGCCGATACTTGCGTTATCAAATGACTGATGACAGATCAGTGGAGGCTCAATGGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGATCATTCCAAGGTGATTTGAGTTCCTCTGACCTCAACCGTCCTTTTCATTTTGAAGGAGCAAATTTTAAGAGGTGGAAACAAAATATGTTTTTTCTTACTTT
GAAGAAGGTGGCTACCGCATGTACCTCTAAAGGACCAAAAATCCTAGAGTCCAATCGAACTGAGGAGCATGTCAAAACTCATACCGCGTGGTCAGAAACCAATTTTATGT
GTAAGAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCTACTGCGAAAGAAGTTTGGGGTGTGTTACAAAAGAAGTATGACACTGAG
AAAGATGGATCTAAGAAGTATGTGGTAAGCCGATACTTGCGTTATCAAATGACTGATGACAGATCAGTGGAGGCTCAATGGCATTAG
Protein sequenceShow/hide protein sequence
MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNMFFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTE
KDGSKKYVVSRYLRYQMTDDRSVEAQWH