CuGenDBv2

Gene ID	CSPI04G08650
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L23
Genome location	Chr4:6405930..6407065
RNA-Seq Expression	CSPI04G08650
Synteny	CSPI04G08650
Gene Ontology terms	GO:0010584 - pollen exine formation (biological process) GO:0015789 - UDP-N-acetylgalactosamine transmembrane transport (biological process) GO:0032543 - mitochondrial translation (biological process) GO:1902183 - regulation of shoot apical meristem development (biological process) GO:1903070 - negative regulation of ER-associated ubiquitin-dependent protein catabolic process (biological process) GO:1903857 - negative regulation of cytokinin dehydrogenase activity (biological process) GO:1990569 - UDP-N-acetylglucosamine transmembrane transport (biological process) GO:0000139 - Golgi membrane (cellular component) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0005783 - endoplasmic reticulum (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005463 - UDP-N-acetylgalactosamine transmembrane transporter activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR013025 - Ribosomal protein L25/L23 IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0053397.1 Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]

1.8e-87

96.55

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKT PSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR

TYK15876.1 Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]

4.7e-88

97.13

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR

XP_004137193.1 uncharacterized protein LOC101221365 [Cucumis sativus]

7.8e-91

100

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR

XP_008455593.1 PREDICTED: uncharacterized protein LOC103495731 isoform X1 [Cucumis melo]

4.7e-88

97.13

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR

XP_016901794.1 PREDICTED: uncharacterized protein LOC103495731 isoform X2 [Cucumis melo]

1.8e-87

97.11

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSG
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSG
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0J2 Uncharacterized protein

3.8e-91

100

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR

A0A1S3C191 uncharacterized protein LOC103495731 isoform X1

2.3e-88

97.13

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR

A0A1S4E0P8 uncharacterized protein LOC103495731 isoform X2

8.7e-88

97.11

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSG
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSG
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSG

A0A5A7UFX6 Nucleotide-binding, alpha-beta plait

8.7e-88

96.55

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKT PSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR

A0A5D3CZJ7 Nucleotide-binding, alpha-beta plait

2.3e-88

97.13

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR

SwissProt top hits

e value

%identity

Alignment

A0KF23 50S ribosomal protein L23

6.1e-06

44.07

Show/hide

Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ V+TLNM+GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR

A4ST04 50S ribosomal protein L23

8.0e-06

44.07

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Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ V+TLNM+GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR

Q0ABH3 50S ribosomal protein L23

8.0e-06

42.37

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Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTL
        E+  K    A K EI++ +E L+  +V  V+T+ M+GK+K+ G +   +PD+KKAYVTL
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTL

Q0I161 50S ribosomal protein L23

4.7e-06

41.1

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Query:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSI
        TN TE    I  K    A+K+EI   +E L+  +VD V+T+ ++GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSI

Q605B4 50S ribosomal protein L23

2.1e-06

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Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR
        +   +  P+ASK++IK  +E ++G +VD V+ LN++GK K+ G  +  + D+KKAYV L+
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR

Arabidopsis top hits

e value

%identity

Alignment

AT4G39880.1 Ribosomal protein L23/L15e family protein

8.1e-54

65.14

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNM+GKKKKRGG+LIAK DYKKAYVTLR+PLSIS D++P
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTY-KGFADRGRRRSGG---GAETVEPSTKFPWSSMR
        ++ IEED+++  K S S + EE + K HWL  KE   I  Y KG   RG  R+     G      + KFPWS+MR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTY-KGFADRGRRRSGG---GAETVEPSTKFPWSSMR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCTTTTACCAACATCACTGAAATTGCTCTTAAAACCATTCC
TTCTGCTTCCAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCAAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGA
TTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCCTTGTCAATATCTCCGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAAT
ATGAACAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAAGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAG
AGGCCGCCGACGAAGTGGCGGTGGCGCTGAAACGGTTGAGCCATCAACTAAATTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

mRNA sequence

Show/hide mRNA sequence

ATAAAATCCTTTACCAATTAGTCCTAAACCCTGTCTACGACCGCTATTATCCCAGCAGAAGGCCTAATAGTCCCAGCAGTGCACCTCGCCGTTCGGTCCCAAATCCCTTC
AGTTCGCTGAAAGCTTAGTACAAATCTACAATCCACAGGATCTCTTCACCTGCTGTTCATAGACGCGGAAGCCAAGAAGTCCAGGAACATGGGAAGCAGACTCGGGAGAA
GAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCTTTTACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATTGAAATC
AAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCAAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATTTTGATCGCAAAGCCTGATTA
CAAGAAGGCCTATGTTACTCTCAGAAATCCCTTGTCAATATCTCCGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAACAGTCTAAGTCCA
GCATTGTTGAGGAGGGCGAGGCAAAGAAGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAAGTGGCGGT
GGCGCTGAAACGGTTGAGCCATCAACTAAATTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTGGTAGTGTGAAGAAACGTATCCAGTTACTTCCTAATTGTCATATTT
TGGATTTTGTTATCCTCAAAATGATAATAGTGCAATAGGTTGGTGATGGCTTTGAGCTTACTGATAGATGTTTTATTTTTTAACTATGAAATGAACTTCTTGGCCCTCTT
ATGGGATGTTTTGCTGGAGGAAGTTCTGTTTTGTTGCTTGAATCAATAAATAAATTAGAGTTGCATTTGTATTATTCCCCTCGTATTATGTGAATTTACTTAGATCATTT
CAGTATGTGGTGTAGGTTCACTATCAAATATTCAATGGCA

Protein sequence

Show/hide protein sequence

MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRN
MNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR

CSPI04G08650 (gene) of Cucumber (PI 183967) v1 genome